Variant report

Variant	rs9349074
Chromosome Location	chr6:38334205-38334206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38328048..38329877-chr6:38334191..38336815,2	K562	blood:
2	chr6:38249444..38252247-chr6:38332089..38334511,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484927	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10484929	0.84[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs11964070	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12164032	0.84[CHB][hapmap]
rs16890561	0.81[AMR][1000 genomes]
rs16890588	0.85[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16890641	0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs2395697	0.87[AMR][1000 genomes]
rs4711545	0.82[ASN][1000 genomes]
rs4714154	0.82[ASN][1000 genomes]
rs55842851	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs59459724	0.81[AMR][1000 genomes]
rs60405483	0.81[ASN][1000 genomes]
rs714930	0.81[AMR][1000 genomes]
rs73422889	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9349069	0.81[AMR][1000 genomes]
rs9349071	0.87[AMR][1000 genomes]
rs9357268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9366956	0.87[AMR][1000 genomes]
rs9369052	0.87[AMR][1000 genomes]
rs9369053	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9369056	0.82[ASN][1000 genomes]
rs9380736	0.87[AMR][1000 genomes]
rs9380738	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9380744	0.83[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs9380746	0.84[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap]
rs9394496	0.83[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs971876	0.94[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032358	chr6:38323745-38415855	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1022724	chr6:38332368-38454527	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38315800-38339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:38326200-38338600	Weak transcription	Ovary	ovary
3	chr6:38326400-38337200	Weak transcription	Psoas Muscle	Psoas
4	chr6:38327400-38338600	Weak transcription	Left Ventricle	heart
5	chr6:38330000-38338000	Weak transcription	Fetal Kidney	kidney
6	chr6:38331200-38339000	Weak transcription	Right Atrium	heart
7	chr6:38332200-38337800	Weak transcription	Adipose Nuclei	Adipose
8	chr6:38332800-38334800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:38332800-38334800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:38332800-38338800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:38333200-38334600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:38333200-38334600	Weak transcription	HSMMtube	muscle
13	chr6:38333200-38338800	Weak transcription	NHDF-Ad	bronchial
14	chr6:38333400-38337800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:38333600-38342400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:38334200-38334800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:38334200-38335400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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