Variant report

Variant	rs11964070
Chromosome Location	chr6:38327096-38327097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484927	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10484929	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs12164032	0.84[CHB][hapmap]
rs16890561	0.81[AMR][1000 genomes]
rs16890588	0.85[CHB][hapmap];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16890641	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2395697	0.87[AMR][1000 genomes]
rs4711545	0.82[ASN][1000 genomes]
rs4714154	0.82[ASN][1000 genomes]
rs55842851	0.81[ASN][1000 genomes]
rs59459724	0.81[AMR][1000 genomes]
rs60405483	0.81[ASN][1000 genomes]
rs714930	0.81[AMR][1000 genomes]
rs73422889	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9349069	0.81[AMR][1000 genomes]
rs9349071	0.87[AMR][1000 genomes]
rs9349074	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9357268	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9366956	0.87[AMR][1000 genomes]
rs9369052	0.87[AMR][1000 genomes]
rs9369053	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9369056	0.82[ASN][1000 genomes]
rs9380736	0.87[AMR][1000 genomes]
rs9380738	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380744	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs9380746	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs9394496	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs971876	0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032358	chr6:38323745-38415855	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:38313800-38331200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:38315800-38339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:38319200-38327200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:38319200-38334200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:38323200-38328800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:38323200-38331800	Weak transcription	Adipose Nuclei	Adipose
8	chr6:38323400-38327400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:38323600-38330400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:38325400-38327400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:38325400-38327400	Enhancers	Fetal Muscle Leg	muscle
12	chr6:38325400-38327600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:38325400-38327600	Enhancers	Brain Anterior Caudate	brain
14	chr6:38325400-38327600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:38325400-38327800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:38325600-38327200	Enhancers	A549	lung
17	chr6:38326200-38327200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr6:38326200-38328400	Weak transcription	Fetal Stomach	stomach
19	chr6:38326200-38331000	Weak transcription	Right Atrium	heart
20	chr6:38326200-38331800	Weak transcription	Lung	lung
21	chr6:38326200-38338600	Weak transcription	Ovary	ovary
22	chr6:38326400-38327600	Enhancers	Brain Angular Gyrus	brain
23	chr6:38326400-38327600	Enhancers	Brain Cingulate Gyrus	brain
24	chr6:38326400-38327600	Enhancers	Brain Hippocampus Middle	brain
25	chr6:38326400-38327600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:38326400-38327600	Enhancers	Brain Substantia Nigra	brain
27	chr6:38326400-38332000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:38326400-38337200	Weak transcription	Psoas Muscle	Psoas
29	chr6:38326600-38331800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:38326600-38332400	Weak transcription	HSMMtube	muscle
31	chr6:38326800-38327600	Enhancers	Fetal Brain Male	brain
32	chr6:38327000-38327200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:38327000-38327200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:38327000-38327400	Enhancers	Left Ventricle	heart

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