Variant report

Variant	rs9349069
Chromosome Location	chr6:38296677-38296678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10484930	0.81[ASN][1000 genomes]
rs11964070	0.81[AMR][1000 genomes]
rs12055513	0.96[ASN][1000 genomes]
rs12524225	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16890552	0.84[ASN][1000 genomes]
rs16890561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16890588	0.81[AMR][1000 genomes]
rs2395697	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4714145	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57575973	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs57934228	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs59459724	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6917308	0.89[ASN][1000 genomes]
rs6938840	0.90[ASN][1000 genomes]
rs714930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73422824	0.81[ASN][1000 genomes]
rs73422833	0.81[ASN][1000 genomes]
rs764347	0.89[ASN][1000 genomes]
rs7771835	0.90[ASN][1000 genomes]
rs871182	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs871184	0.84[ASN][1000 genomes]
rs9349071	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349074	0.81[AMR][1000 genomes]
rs9357268	0.81[AMR][1000 genomes]
rs9366956	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369046	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9369047	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9369050	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9369052	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369053	0.81[AMR][1000 genomes]
rs9380734	0.88[ASN][1000 genomes]
rs9380735	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380736	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380738	0.81[AMR][1000 genomes]
rs9394490	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9394491	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38275400-38301200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:38278000-38310600	Weak transcription	Gastric	stomach
3	chr6:38278400-38305400	Weak transcription	Pancreas	Pancrea
4	chr6:38282600-38301400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:38283000-38304000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:38284800-38301200	Weak transcription	Fetal Intestine Small	intestine
7	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:38287400-38301200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:38287600-38301200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:38288000-38305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:38289200-38301000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:38291000-38305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:38291400-38317600	Weak transcription	Rectal Smooth Muscle	rectum

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