Variant report

Variant	rs7781536
Chromosome Location	chr7:3321076-3321077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10224159	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10232199	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10232765	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10235815	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10239408	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10240575	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246895	0.95[JPT][hapmap]
rs10249955	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10249981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10255605	1.00[JPT][hapmap]
rs10255825	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10262464	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10262783	1.00[JPT][hapmap]
rs10263832	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10266085	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10269416	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10270365	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10274465	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs10274978	0.90[JPT][hapmap]
rs10275922	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10277545	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10278205	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10281401	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10435012	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10435013	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10435014	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10435102	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10435103	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10435104	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10454314	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10499327	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs10951151	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1112758	0.83[ASN][1000 genomes]
rs11761186	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11763250	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11764387	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs11765903	1.00[JPT][hapmap]
rs11766702	0.95[JPT][hapmap]
rs11770681	0.85[JPT][hapmap]
rs11771359	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11771755	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11773473	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11773479	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11773532	0.86[CHB][hapmap]
rs11973050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11977306	0.95[JPT][hapmap]
rs11979128	0.95[CEU][hapmap]
rs11979697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11979842	0.88[CEU][hapmap]
rs11981092	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12530858	0.80[ASN][1000 genomes]
rs12666381	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12667184	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs12700766	0.95[ASN][1000 genomes]
rs12700767	0.95[ASN][1000 genomes]
rs12700808	0.92[CEU][hapmap]
rs12700827	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs13225681	0.95[ASN][1000 genomes]
rs13240540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13243372	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357309	1.00[JPT][hapmap]
rs1357310	1.00[JPT][hapmap]
rs1357312	1.00[JPT][hapmap]
rs1403159	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs1464534	0.95[JPT][hapmap]
rs1522501	0.89[JPT][hapmap]
rs1525558	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1554497	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1554498	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1554502	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1581564	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17133223	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807849	0.82[ASN][1000 genomes]
rs1818931	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1818932	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1851419	0.86[JPT][hapmap]
rs1880610	0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1882431	1.00[JPT][hapmap]
rs1915981	1.00[JPT][hapmap]
rs1915982	1.00[JPT][hapmap]
rs1915983	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2056476	0.88[CEU][hapmap]
rs2140114	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2177167	0.95[JPT][hapmap]
rs2204121	0.95[JPT][hapmap]
rs28713780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34170704	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34613896	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35682547	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4236326	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4286835	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4302734	1.00[JPT][hapmap]
rs4416733	0.92[CEU][hapmap]
rs4507661	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4507662	0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4719943	0.90[JPT][hapmap]
rs4722679	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs4722705	0.95[CEU][hapmap]
rs4722735	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4722830	1.00[JPT][hapmap]
rs4722850	0.95[JPT][hapmap]
rs6415253	0.86[JPT][hapmap]
rs6415254	1.00[JPT][hapmap]
rs6462040	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs6462068	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6462069	0.95[JPT][hapmap]
rs6462071	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs6946678	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6947525	0.90[JPT][hapmap]
rs6967281	1.00[JPT][hapmap]
rs6968665	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs6969267	0.95[JPT][hapmap]
rs6978391	0.88[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs71531470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776539	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7776559	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs7777327	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7779688	0.95[JPT][hapmap]
rs7780498	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7781694	0.99[ASN][1000 genomes]
rs7783666	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7784497	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7790430	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs7791187	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7791343	0.95[JPT][hapmap]
rs7793799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794409	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794534	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7794698	0.99[ASN][1000 genomes]
rs7795300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7795899	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7798141	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7799953	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7800089	0.81[JPT][hapmap]
rs7802106	1.00[JPT][hapmap]
rs7807065	0.94[JPT][hapmap]
rs7809446	0.95[JPT][hapmap]
rs939912	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs940779	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs940780	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs940781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9654983	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9654984	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9655268	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9655269	0.81[CHB][hapmap]
rs9969296	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015656	chr7:3131821-3321353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv464264	chr7:3194156-3349625	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv605880	chr7:3194156-3349625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1023127	chr7:3216344-3466223	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv887322	chr7:3264728-3332630	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv887323	chr7:3271998-3332630	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2758100	chr7:3286625-3560229	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv2759500	chr7:3286625-3560229	Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1019515	chr7:3300048-3479972	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv887324	chr7:3308195-3400105	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3318800-3321800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:3319200-3323400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:3319400-3321600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:3319600-3322200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:3319600-3322200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:3319800-3321400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:3320200-3321400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:3320200-3322000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:3320400-3322000	Weak transcription	Fetal Stomach	stomach
10	chr7:3320400-3323200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:3320600-3321600	Enhancers	Stomach Smooth Muscle	stomach
12	chr7:3320600-3322200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:3320800-3321200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:3320800-3322000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:3320800-3322200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:3320800-3322200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:3320800-3322400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:3320800-3323200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:3321000-3322000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:3321000-3322000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:3321000-3322000	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:3321000-3322200	Weak transcription	NHLF	lung

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