Variant report

Variant	rs7783754
Chromosome Location	chr7:38218442-38218443
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38218320..38221053-chr7:38246020..38247686,2	K562	blood:
2	chr7:38217907..38218526-chr7:44613300..44613849,2	NB4	blood:

Variant related genes	Relation type
ENSG00000136271	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11977525	0.88[AFR][1000 genomes]
rs11981043	0.88[AFR][1000 genomes]
rs6462815	0.88[AFR][1000 genomes]
rs6958156	0.88[AFR][1000 genomes]
rs6962982	0.88[AFR][1000 genomes]
rs6973613	0.88[AFR][1000 genomes]
rs7777136	0.88[AFR][1000 genomes]
rs7782241	0.88[AFR][1000 genomes]
rs7785667	0.88[AFR][1000 genomes]
rs7800489	0.88[AFR][1000 genomes]
rs7806250	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2762664	chr7:38201814-38228480	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38216800-38218600	Active TSS	Fetal Kidney	kidney
2	chr7:38216800-38218800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:38217000-38218600	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr7:38217000-38218600	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr7:38217000-38218600	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr7:38217000-38218600	Active TSS	Fetal Brain Male	brain
7	chr7:38217000-38218800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:38217000-38218800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:38217000-38218800	Active TSS	Brain Angular Gyrus	brain
10	chr7:38217000-38218800	Active TSS	Fetal Brain Female	brain
11	chr7:38217000-38219200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr7:38217000-38219400	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr7:38217000-38219400	Active TSS	GM12878-XiMat	blood
14	chr7:38217000-38219600	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr7:38217000-38219800	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr7:38217200-38218600	Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr7:38217200-38218600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr7:38217200-38218600	Active TSS	Liver	Liver
19	chr7:38217200-38218600	Active TSS	Brain Anterior Caudate	brain
20	chr7:38217200-38218600	Active TSS	Brain Cingulate Gyrus	brain
21	chr7:38217200-38218600	Active TSS	Brain Hippocampus Middle	brain
22	chr7:38217200-38218600	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr7:38217200-38218600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:38217200-38218600	Active TSS	Brain Substantia Nigra	brain
25	chr7:38217200-38218600	Active TSS	Colonic Mucosa	Colon
26	chr7:38217200-38218600	Active TSS	Fetal Intestine Small	intestine
27	chr7:38217200-38218600	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr7:38217200-38218600	Active TSS	Thymus	Thymus
29	chr7:38217200-38218600	Bivalent/Poised TSS	HepG2	liver
30	chr7:38217200-38218600	Active TSS	HUVEC	blood vessel
31	chr7:38217200-38218600	Active TSS	NHEK	skin
32	chr7:38217200-38218800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr7:38217200-38218800	Active TSS	H1 Cell Line	embryonic stem cell
34	chr7:38217200-38218800	Active TSS	H9 Cell Line	embryonic stem cell
35	chr7:38217200-38218800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:38217200-38218800	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr7:38217200-38218800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:38217200-38218800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:38217200-38218800	Active TSS	Primary T cells fromperipheralblood	blood
40	chr7:38217200-38218800	Active TSS	Fetal Lung	lung
41	chr7:38217200-38218800	Active TSS	Fetal Muscle Trunk	muscle
42	chr7:38217200-38218800	Active TSS	Fetal Stomach	stomach
43	chr7:38217200-38218800	Active TSS	Fetal Thymus	thymus
44	chr7:38217200-38218800	Active TSS	Psoas Muscle	Psoas
45	chr7:38217200-38218800	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr7:38217200-38218800	Active TSS	A549	lung
47	chr7:38217200-38218800	Active TSS	K562	blood
48	chr7:38217200-38219000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:38217200-38219000	Active TSS	Colon Smooth Muscle	Colon
50	chr7:38217200-38219000	Active TSS	Pancreatic Islets	Pancreatic Islet

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