Variant report

Variant	rs7800489
Chromosome Location	chr7:38216268-38216269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11977525	1.00[AFR][1000 genomes]
rs11981043	1.00[AFR][1000 genomes]
rs6462815	1.00[AFR][1000 genomes]
rs6958156	1.00[AFR][1000 genomes]
rs6962982	1.00[AFR][1000 genomes]
rs6973613	1.00[AFR][1000 genomes]
rs7777136	1.00[AFR][1000 genomes]
rs7782241	1.00[AFR][1000 genomes]
rs7783754	0.88[AFR][1000 genomes]
rs7785667	1.00[AFR][1000 genomes]
rs7787568	0.88[AFR][1000 genomes]
rs7806250	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2762664	chr7:38201814-38228480	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38210200-38217000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:38210200-38217000	Weak transcription	NH-A	brain
3	chr7:38210400-38217000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:38211800-38217200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:38212400-38217200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:38212600-38217000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:38215800-38217200	Weak transcription	Liver	Liver
8	chr7:38216200-38216800	Enhancers	Dnd41	blood
9	chr7:38216200-38216800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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