Variant report

Variant	rs6462815
Chromosome Location	chr7:38209964-38209965
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11977525	1.00[AFR][1000 genomes]
rs11981043	1.00[AFR][1000 genomes]
rs6958156	1.00[AFR][1000 genomes]
rs6962982	1.00[AFR][1000 genomes]
rs6973613	1.00[AFR][1000 genomes]
rs7777136	1.00[AFR][1000 genomes]
rs7782241	1.00[AFR][1000 genomes]
rs7783754	0.88[AFR][1000 genomes]
rs7785667	1.00[AFR][1000 genomes]
rs7787568	0.88[AFR][1000 genomes]
rs7800489	1.00[AFR][1000 genomes]
rs7806250	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2762664	chr7:38201814-38228480	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38207400-38210000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:38207800-38211200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:38208200-38210400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38208400-38210200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:38208400-38210800	Enhancers	GM12878-XiMat	blood
6	chr7:38208600-38210000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:38208600-38210200	Enhancers	NH-A	brain
8	chr7:38208800-38210000	Enhancers	NHLF	lung
9	chr7:38209200-38210200	Enhancers	HSMM	muscle
10	chr7:38209200-38210400	Enhancers	NHDF-Ad	bronchial
11	chr7:38209200-38210400	Enhancers	Osteobl	bone
12	chr7:38209400-38210000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:38209400-38210000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:38209400-38210000	Enhancers	HSMMtube	muscle
15	chr7:38209400-38210000	Enhancers	K562	blood
16	chr7:38209400-38210200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr7:38209400-38210200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:38209400-38210400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:38209600-38210000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:38209600-38210000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr7:38209600-38211200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:38209800-38211000	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr7:38209800-38212200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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