Variant report

Variant	rs7787568
Chromosome Location	chr7:38225914-38225915
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38224703..38226374-chr7:38226837..38229544,2	K562	blood:
2	chr7:38219568..38221988-chr7:38224913..38228070,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11977525	0.88[AFR][1000 genomes]
rs11981043	0.88[AFR][1000 genomes]
rs6462815	0.88[AFR][1000 genomes]
rs6958156	0.88[AFR][1000 genomes]
rs6962982	0.88[AFR][1000 genomes]
rs6973613	0.88[AFR][1000 genomes]
rs7777136	0.88[AFR][1000 genomes]
rs7782241	0.88[AFR][1000 genomes]
rs7785667	0.88[AFR][1000 genomes]
rs7800489	0.88[AFR][1000 genomes]
rs7806250	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv830963	chr7:38172988-38344779	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2762664	chr7:38201814-38228480	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv2758112	chr7:38218703-38523455	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv2759524	chr7:38218703-38523455	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv427776	chr7:38218703-38523455	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv830964	chr7:38218708-38390518	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38218600-38226200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:38218600-38226600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:38218600-38259200	Weak transcription	Colonic Mucosa	Colon
4	chr7:38218800-38227400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:38218800-38227800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:38218800-38227800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:38219200-38226200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:38219200-38226600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:38219600-38226200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:38219600-38241400	Weak transcription	Fetal Intestine Large	intestine
11	chr7:38219800-38226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:38219800-38227800	Weak transcription	Lung	lung
13	chr7:38219800-38234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:38220200-38226200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:38220200-38226200	Weak transcription	NHEK	skin
16	chr7:38220200-38226600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:38220200-38226600	Weak transcription	Aorta	Aorta
18	chr7:38220200-38227400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:38220200-38227800	Weak transcription	Brain Substantia Nigra	brain
20	chr7:38220200-38235400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr7:38220200-38235400	Weak transcription	Thymus	Thymus
22	chr7:38220200-38236800	Weak transcription	Fetal Stomach	stomach
23	chr7:38220200-38246600	Weak transcription	Fetal Thymus	thymus
24	chr7:38220200-38254800	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:38220400-38226200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:38220400-38226200	Weak transcription	NHLF	lung
27	chr7:38220400-38226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:38220400-38226400	Weak transcription	HMEC	breast
29	chr7:38220400-38226600	Weak transcription	Brain Angular Gyrus	brain
30	chr7:38220400-38227400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:38220400-38228000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:38220400-38228400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:38220400-38230000	Weak transcription	Fetal Lung	lung
34	chr7:38220400-38232400	Weak transcription	Fetal Brain Male	brain
35	chr7:38220400-38247000	Weak transcription	Fetal Intestine Small	intestine
36	chr7:38220600-38226400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:38220800-38228000	Weak transcription	Fetal Brain Female	brain
38	chr7:38220800-38231000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr7:38221000-38236400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr7:38221000-38246800	Weak transcription	Primary T cells from cord blood	blood
41	chr7:38221400-38228000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr7:38222400-38227400	Weak transcription	Dnd41	blood
43	chr7:38222600-38226200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr7:38223000-38226000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:38223000-38226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:38223600-38255600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:38223800-38226000	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:38224000-38231400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr7:38224200-38235800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:38224200-38235800	Weak transcription	Primary monocytes fromperipheralblood	blood

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