Variant report

Variant	rs7802089
Chromosome Location	chr7:145716640-145716641
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:145706930..145710318-chr7:145716575..145718700,3	K562	blood:
2	chr7:145715314..145718621-chr7:145718754..145721889,3	K562	blood:
3	chr7:145716150..145718866-chr7:145724746..145727382,4	K562	blood:
4	chr7:145716150..145718502-chr7:145724762..145727451,3	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10224199	0.85[ASN][1000 genomes]
rs10271223	0.81[ASN][1000 genomes]
rs10271257	0.81[ASN][1000 genomes]
rs10458274	0.85[ASN][1000 genomes]
rs11972095	0.87[ASN][1000 genomes]
rs11975240	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11975868	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11977340	0.92[ASN][1000 genomes]
rs11977410	0.92[ASN][1000 genomes]
rs11982943	0.93[ASN][1000 genomes]
rs12112237	0.83[ASN][1000 genomes]
rs12154288	0.92[ASN][1000 genomes]
rs12666281	0.85[ASN][1000 genomes]
rs1523733	0.85[ASN][1000 genomes]
rs17169902	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177748	0.92[ASN][1000 genomes]
rs2372461	0.93[ASN][1000 genomes]
rs28687396	0.85[ASN][1000 genomes]
rs28860008	0.81[ASN][1000 genomes]
rs4436045	0.81[ASN][1000 genomes]
rs4534070	0.83[ASN][1000 genomes]
rs55637642	0.88[ASN][1000 genomes]
rs55764478	0.85[ASN][1000 genomes]
rs55844645	0.92[ASN][1000 genomes]
rs55910573	0.88[ASN][1000 genomes]
rs56051867	0.88[ASN][1000 genomes]
rs56055653	0.85[ASN][1000 genomes]
rs56107552	0.88[ASN][1000 genomes]
rs56198146	0.92[ASN][1000 genomes]
rs56662540	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56747015	0.83[ASN][1000 genomes]
rs56775210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57679157	0.87[ASN][1000 genomes]
rs58456605	0.80[ASN][1000 genomes]
rs58546376	0.80[ASN][1000 genomes]
rs58869616	0.83[ASN][1000 genomes]
rs59450195	0.83[ASN][1000 genomes]
rs6464704	0.80[ASN][1000 genomes]
rs6946087	0.81[ASN][1000 genomes]
rs6952571	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6954312	0.84[ASN][1000 genomes]
rs6954634	0.85[ASN][1000 genomes]
rs6956829	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6960698	0.92[ASN][1000 genomes]
rs6966233	1.00[ASN][1000 genomes]
rs6969543	0.85[ASN][1000 genomes]
rs6978472	0.83[ASN][1000 genomes]
rs6978905	0.83[ASN][1000 genomes]
rs7781219	0.80[ASN][1000 genomes]
rs7785512	0.85[ASN][1000 genomes]
rs7788691	0.85[ASN][1000 genomes]
rs7792245	0.85[ASN][1000 genomes]
rs7805756	0.85[ASN][1000 genomes]
rs7805880	0.85[ASN][1000 genomes]
rs7808969	0.85[ASN][1000 genomes]
rs949729	0.92[ASN][1000 genomes]
rs9655683	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889385	chr7:145617629-145803095	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1024723	chr7:145691540-145777997	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv539171	chr7:145691540-145777997	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145716200-145716800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr7:145716200-145716800	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr7:145716200-145717000	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr7:145716400-145716800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr7:145716400-145716800	Active TSS	K562	blood

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