Variant report

Variant	rs10458274
Chromosome Location	chr7:145591133-145591134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145563311..145566227-chr7:145589236..145592014,2	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10215152	0.86[ASN][1000 genomes]
rs10215527	0.84[ASN][1000 genomes]
rs10224199	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10238054	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10249365	0.86[ASN][1000 genomes]
rs10249899	0.84[ASN][1000 genomes]
rs10255978	0.86[ASN][1000 genomes]
rs10268002	0.86[ASN][1000 genomes]
rs10271223	0.89[ASN][1000 genomes]
rs10271257	0.89[ASN][1000 genomes]
rs10280333	0.84[ASN][1000 genomes]
rs1112676	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11972095	0.85[ASN][1000 genomes]
rs11972487	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11975240	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11975868	0.80[ASN][1000 genomes]
rs11977340	0.83[ASN][1000 genomes]
rs11977410	0.83[ASN][1000 genomes]
rs11979253	0.88[ASN][1000 genomes]
rs12112237	0.92[ASN][1000 genomes]
rs12154288	0.83[ASN][1000 genomes]
rs12666281	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12668333	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12674186	0.83[ASN][1000 genomes]
rs13243170	0.80[ASN][1000 genomes]
rs1403839	0.86[ASN][1000 genomes]
rs1523733	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17169863	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17169902	0.83[ASN][1000 genomes]
rs2030629	0.84[ASN][1000 genomes]
rs2030631	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2030632	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2091097	0.88[ASN][1000 genomes]
rs2103093	0.88[ASN][1000 genomes]
rs2140472	0.86[ASN][1000 genomes]
rs2177748	0.83[ASN][1000 genomes]
rs2372128	0.86[ASN][1000 genomes]
rs2372129	0.86[ASN][1000 genomes]
rs2372133	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28459185	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28687396	0.93[ASN][1000 genomes]
rs28816522	0.86[ASN][1000 genomes]
rs28846092	0.84[ASN][1000 genomes]
rs28859574	0.86[ASN][1000 genomes]
rs28860008	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28875289	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28876797	0.84[ASN][1000 genomes]
rs2888248	0.86[ASN][1000 genomes]
rs35095326	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4436045	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4534070	0.92[ASN][1000 genomes]
rs4580953	0.86[ASN][1000 genomes]
rs55637642	0.83[ASN][1000 genomes]
rs55764478	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55788321	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55844645	0.83[ASN][1000 genomes]
rs55910573	0.83[ASN][1000 genomes]
rs55930903	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56051867	0.83[ASN][1000 genomes]
rs56055653	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56067475	0.83[ASN][1000 genomes]
rs56107552	0.83[ASN][1000 genomes]
rs56198146	0.83[ASN][1000 genomes]
rs56295629	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56662540	0.85[ASN][1000 genomes]
rs56747015	0.92[ASN][1000 genomes]
rs56775210	0.85[ASN][1000 genomes]
rs57679157	0.85[ASN][1000 genomes]
rs58456605	0.95[ASN][1000 genomes]
rs58546376	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58869616	0.92[ASN][1000 genomes]
rs59450195	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59723212	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61044500	0.90[ASN][1000 genomes]
rs61593228	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6464694	0.81[ASN][1000 genomes]
rs6464695	0.81[ASN][1000 genomes]
rs6464697	0.86[ASN][1000 genomes]
rs6464698	0.86[ASN][1000 genomes]
rs6464701	0.86[ASN][1000 genomes]
rs6464702	0.83[ASN][1000 genomes]
rs6464703	0.88[ASN][1000 genomes]
rs6464704	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6942501	0.86[ASN][1000 genomes]
rs6943097	0.86[ASN][1000 genomes]
rs6946087	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6948800	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6952571	0.83[ASN][1000 genomes]
rs6954312	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6954634	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6956829	0.83[ASN][1000 genomes]
rs6957646	0.84[ASN][1000 genomes]
rs6960698	0.83[ASN][1000 genomes]
rs6966233	0.85[ASN][1000 genomes]
rs6966607	0.86[ASN][1000 genomes]
rs6969543	0.93[ASN][1000 genomes]
rs6972421	0.86[ASN][1000 genomes]
rs6974953	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6976208	0.83[ASN][1000 genomes]
rs6978472	0.92[ASN][1000 genomes]
rs6978905	0.92[ASN][1000 genomes]
rs6979675	0.86[ASN][1000 genomes]
rs73453054	0.86[ASN][1000 genomes]
rs73456937	0.88[ASN][1000 genomes]
rs73458832	0.83[ASN][1000 genomes]
rs7780753	0.87[GIH][hapmap]
rs7781219	0.95[ASN][1000 genomes]
rs7785512	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7788691	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7792245	0.90[ASN][1000 genomes]
rs7795695	0.82[ASN][1000 genomes]
rs7799203	0.86[ASN][1000 genomes]
rs7800906	0.84[ASN][1000 genomes]
rs7802089	0.85[ASN][1000 genomes]
rs7805756	0.93[ASN][1000 genomes]
rs7805880	0.93[ASN][1000 genomes]
rs7806864	0.86[ASN][1000 genomes]
rs7808969	0.93[ASN][1000 genomes]
rs949729	0.83[ASN][1000 genomes]
rs9655578	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9655683	0.88[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9918491	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9986960	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10458274	OR9A2	cis	cerebellum	SCAN
rs10458274	OR9A2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145590800-145591200	Flanking Active TSS	K562	blood

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