Variant report

Variant	rs6954312
Chromosome Location	chr7:145604258-145604259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145603747..145606720-chr7:145610565..145612229,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10224199	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10238054	0.88[EUR][1000 genomes]
rs10458274	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1112676	0.89[EUR][1000 genomes]
rs11972095	0.93[ASN][1000 genomes]
rs11972487	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11975240	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11975868	0.89[ASN][1000 genomes]
rs11977340	0.92[ASN][1000 genomes]
rs11977410	0.92[ASN][1000 genomes]
rs11982943	0.87[ASN][1000 genomes]
rs12112237	0.90[ASN][1000 genomes]
rs12154288	0.92[ASN][1000 genomes]
rs12666281	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12668333	0.89[EUR][1000 genomes]
rs12674186	0.82[ASN][1000 genomes]
rs12703750	0.82[ASN][1000 genomes]
rs1523733	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17169863	0.89[EUR][1000 genomes]
rs17169902	0.92[ASN][1000 genomes]
rs2030631	0.89[EUR][1000 genomes]
rs2030632	0.89[EUR][1000 genomes]
rs2177748	0.92[ASN][1000 genomes]
rs2372133	0.89[EUR][1000 genomes]
rs2372461	0.87[ASN][1000 genomes]
rs28459185	0.89[EUR][1000 genomes]
rs28687396	0.82[ASN][1000 genomes]
rs28860008	0.92[EUR][1000 genomes]
rs28875289	0.89[EUR][1000 genomes]
rs35095326	0.89[EUR][1000 genomes]
rs4436045	0.94[EUR][1000 genomes]
rs4534070	0.90[ASN][1000 genomes]
rs55637642	0.92[ASN][1000 genomes]
rs55764478	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55788321	0.89[EUR][1000 genomes]
rs55844645	0.92[ASN][1000 genomes]
rs55910573	0.92[ASN][1000 genomes]
rs55930903	0.89[EUR][1000 genomes]
rs56051867	0.92[ASN][1000 genomes]
rs56055653	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56067475	0.82[ASN][1000 genomes]
rs56107552	0.92[ASN][1000 genomes]
rs56198146	0.92[ASN][1000 genomes]
rs56295629	0.86[EUR][1000 genomes]
rs56662540	0.84[ASN][1000 genomes]
rs56747015	0.90[ASN][1000 genomes]
rs56775210	0.84[ASN][1000 genomes]
rs57679157	0.93[ASN][1000 genomes]
rs58456605	0.93[ASN][1000 genomes]
rs58546376	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58869616	0.90[ASN][1000 genomes]
rs59450195	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59723212	0.89[EUR][1000 genomes]
rs61044500	0.89[ASN][1000 genomes]
rs61593228	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6464704	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6946087	0.94[EUR][1000 genomes]
rs6948800	0.89[EUR][1000 genomes]
rs6952571	0.92[ASN][1000 genomes]
rs6954634	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6956829	0.92[ASN][1000 genomes]
rs6960698	0.92[ASN][1000 genomes]
rs6966233	0.84[ASN][1000 genomes]
rs6969543	0.82[ASN][1000 genomes]
rs6974953	0.89[EUR][1000 genomes]
rs6978472	0.90[ASN][1000 genomes]
rs6978905	0.90[ASN][1000 genomes]
rs73458832	0.82[ASN][1000 genomes]
rs7781219	0.93[ASN][1000 genomes]
rs7785512	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7788691	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7792245	0.98[ASN][1000 genomes]
rs7795695	0.80[ASN][1000 genomes]
rs7802089	0.84[ASN][1000 genomes]
rs7805756	0.82[ASN][1000 genomes]
rs7805880	0.82[ASN][1000 genomes]
rs7808969	0.82[ASN][1000 genomes]
rs949729	0.92[ASN][1000 genomes]
rs9655578	0.94[EUR][1000 genomes]
rs9655683	0.82[ASN][1000 genomes]
rs9918491	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145598000-145614000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links