Variant report

Variant	rs7804323
Chromosome Location	chr7:83837045-83837046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83836807..83838532-chr7:83840075..83842116,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10256270	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10264700	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17158706	1.00[MEX][hapmap]
rs17158709	1.00[MEX][hapmap]
rs73179383	0.81[EUR][1000 genomes]
rs73179400	0.85[EUR][1000 genomes]
rs73181306	0.92[EUR][1000 genomes]
rs73181369	0.86[EUR][1000 genomes]
rs73181375	0.86[EUR][1000 genomes]
rs7808707	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9642178	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83825800-83841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:83830400-83839600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:83833600-83838200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:83833800-83837600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:83833800-83840200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:83834400-83838400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:83834600-83838200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:83834800-83838200	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:83835600-83837200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:83836000-83837200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:83836200-83837400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:83836200-83837400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:83836400-83837200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:83836400-83837200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr7:83836400-83837200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:83836400-83837400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:83836400-83837600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:83836800-83837200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:83836800-83837200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr7:83836800-83837200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr7:83836800-83837200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:83836800-83838200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:83837000-83837400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:83837000-83837800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links