Variant report

Variant	rs73181375
Chromosome Location	chr7:83841037-83841038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83836807..83838532-chr7:83840075..83842116,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1006795	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10224865	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10256270	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10258884	0.80[ASN][1000 genomes]
rs10264700	0.85[EUR][1000 genomes]
rs12333631	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1356804	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17158818	0.80[ASN][1000 genomes]
rs17158848	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs28397702	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28884542	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58835109	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6949774	0.80[ASN][1000 genomes]
rs6953184	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6972377	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6978737	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73179383	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73179400	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73181306	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73181369	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73181392	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183125	0.93[EUR][1000 genomes]
rs73185111	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73185120	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73185127	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73185135	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73189039	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7802925	0.90[EUR][1000 genomes]
rs7804323	0.86[EUR][1000 genomes]
rs7808707	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9642178	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs977752	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83825800-83841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:83838200-83846400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:83840000-83841200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:83840000-83846200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:83841000-83841400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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