Variant report

Variant	rs10258884
Chromosome Location	chr7:83931034-83931035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1006795	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10224865	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10256270	0.92[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap]
rs12333631	0.83[ASN][1000 genomes]
rs1356804	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158818	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158848	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28397702	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28884542	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58835109	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6949774	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953184	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6972377	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6978737	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73181375	0.80[ASN][1000 genomes]
rs73181392	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73183125	0.85[EUR][1000 genomes]
rs73185111	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73185120	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73185127	0.82[EUR][1000 genomes]
rs73185135	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73189024	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73189039	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7802925	0.82[EUR][1000 genomes]
rs9642178	0.92[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap]
rs977752	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1793815	chr7:83909503-83997755	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv524905	chr7:83911271-83944506	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv888631	chr7:83911271-84010005	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2762683	chr7:83916748-83932659	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83924400-83943800	Weak transcription	NHDF-Ad	bronchial
2	chr7:83930800-83950000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links