Variant report

Variant	rs73181392
Chromosome Location	chr7:83860527-83860528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1006795	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10224865	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10256270	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10258884	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10264700	0.91[EUR][1000 genomes]
rs12333631	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1356804	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17158818	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17158848	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28397702	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28884542	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58835109	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6949774	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6953184	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6972377	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6978737	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73179383	0.86[AMR][1000 genomes]
rs73179400	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73181306	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73181369	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73181375	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183125	1.00[EUR][1000 genomes]
rs73185111	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73185120	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73185127	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73185135	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73189024	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73189039	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7802925	0.97[EUR][1000 genomes]
rs7808707	0.86[AMR][1000 genomes]
rs9642178	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs977752	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83857600-83874000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:83859400-83860800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:83859800-83860600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:83859800-83861000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:83860000-83861000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:83860000-83861200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:83860000-83861800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:83860000-83862200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:83860200-83861400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:83860200-83861400	Enhancers	NHLF	lung
11	chr7:83860200-83861400	Enhancers	Osteobl	bone
12	chr7:83860200-83862400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:83860200-83862600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:83860400-83860600	Enhancers	Fetal Lung	lung
15	chr7:83860400-83860800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:83860400-83861200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:83860400-83861200	Enhancers	HMEC	breast
18	chr7:83860400-83861200	Enhancers	NH-A	brain
19	chr7:83860400-83861200	Enhancers	NHDF-Ad	bronchial
20	chr7:83860400-83861400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:83860400-83862600	Enhancers	Colon Smooth Muscle	Colon

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