Variant report

Variant	rs1356804
Chromosome Location	chr7:83885441-83885442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1006795	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10224865	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10256270	0.81[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10258884	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10264700	0.91[EUR][1000 genomes]
rs12333631	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17158818	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17158848	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28397702	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28884542	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58835109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6949774	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6953184	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6972377	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6978737	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179383	0.87[AFR][1000 genomes]
rs73179400	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73181306	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73181369	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73181375	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73181392	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73183125	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73185111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73185120	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73185127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73185135	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189024	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73189039	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7802925	0.97[EUR][1000 genomes]
rs7808707	1.00[YRI][hapmap]
rs9642178	0.81[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs977752	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv5818	chr7:83874968-83919804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83875800-83893800	Weak transcription	NHDF-Ad	bronchial
2	chr7:83880200-83886000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:83880200-83892200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:83881000-83885800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:83881200-83886000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:83881600-83886800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:83881600-83886800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:83881800-83887000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:83881800-83894000	Weak transcription	NH-A	brain
10	chr7:83882000-83886200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:83884400-83886400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:83884600-83887000	Enhancers	Fetal Lung	lung
13	chr7:83885200-83885600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:83885400-83885600	Enhancers	Colon Smooth Muscle	Colon
15	chr7:83885400-83886200	Enhancers	Fetal Kidney	kidney
16	chr7:83885400-83888800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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