Variant report

Variant	rs58835109
Chromosome Location	chr7:83901404-83901405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006795	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10224865	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256270	0.84[ASN][1000 genomes]
rs10258884	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10264700	0.88[EUR][1000 genomes]
rs12333631	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1356804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17158818	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17158848	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28397702	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28884542	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6949774	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6953184	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6972377	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6978737	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73179383	0.87[AFR][1000 genomes]
rs73179400	0.86[ASN][1000 genomes]
rs73181306	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73181369	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73181375	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73181392	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73183125	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73185111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73185120	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73185127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73185135	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73189024	0.81[ASN][1000 genomes]
rs73189039	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7802925	0.93[EUR][1000 genomes]
rs9642178	0.84[ASN][1000 genomes]
rs977752	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv5818	chr7:83874968-83919804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83894200-83924000	Weak transcription	NHDF-Ad	bronchial
2	chr7:83894600-83903400	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:83894800-83902800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:83899800-83903600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:83901200-83902000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:83901400-83901800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:83901400-83910600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links