Variant report

Variant	rs10264700
Chromosome Location	chr7:83862435-83862436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1006795	0.88[EUR][1000 genomes]
rs10224865	0.88[EUR][1000 genomes]
rs12333631	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1356804	0.91[EUR][1000 genomes]
rs28397702	0.88[EUR][1000 genomes]
rs28884542	0.91[EUR][1000 genomes]
rs58835109	0.88[EUR][1000 genomes]
rs6953184	0.89[EUR][1000 genomes]
rs6972377	0.89[EUR][1000 genomes]
rs6978737	0.88[EUR][1000 genomes]
rs73181369	0.85[EUR][1000 genomes]
rs73181375	0.85[EUR][1000 genomes]
rs73181392	0.91[EUR][1000 genomes]
rs73183125	0.91[EUR][1000 genomes]
rs73185111	0.88[EUR][1000 genomes]
rs73185120	0.88[EUR][1000 genomes]
rs73185127	0.88[EUR][1000 genomes]
rs73185135	0.91[EUR][1000 genomes]
rs7802925	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7804323	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs977752	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2754468	chr7:83851249-84166749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83857600-83874000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:83860200-83862600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:83860400-83862600	Enhancers	Colon Smooth Muscle	Colon
4	chr7:83861000-83865000	Weak transcription	NHEK	skin
5	chr7:83861000-83865200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:83861200-83865000	Weak transcription	HMEC	breast
7	chr7:83861200-83865200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:83861200-83865200	Weak transcription	NH-A	brain
9	chr7:83861200-83865200	Weak transcription	NHDF-Ad	bronchial
10	chr7:83861200-83867000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:83861800-83862600	Enhancers	Fetal Lung	lung
12	chr7:83861800-83863200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:83862000-83865000	Weak transcription	Osteobl	bone
14	chr7:83862200-83865600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:83862400-83865000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:83862400-83865000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:83862400-83865200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:83862400-83865200	Weak transcription	A549	lung
19	chr7:83862400-83865200	Weak transcription	NHLF	lung
20	chr7:83862400-83865400	Weak transcription	Muscle Satellite Cultured Cells	--

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