Variant report

Variant	rs7807957
Chromosome Location	chr7:39426963-39426964
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39424668..39427286-chr7:39432218..39433755,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10227915	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs10265404	0.86[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes]
rs10282049	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11514785	0.89[AMR][1000 genomes]
rs11981229	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12666115	0.93[MEX][hapmap];0.95[TSI][hapmap]
rs13438025	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17701573	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2074936	0.93[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes]
rs2237408	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237410	0.93[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2237414	0.89[AMR][1000 genomes]
rs2299136	0.93[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2299138	0.86[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3800853	0.95[AMR][1000 genomes]
rs4540309	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4623320	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs55751785	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61105243	0.99[ASN][1000 genomes]
rs61543464	0.89[ASN][1000 genomes]
rs6462913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6462914	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6979897	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7801145	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7807957	TAF1B	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39426000-39432800	Weak transcription	Fetal Muscle Leg	muscle

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