Variant report

Variant	rs7819235
Chromosome Location	chr8:60831756-60831757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10086808	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10087623	0.97[ASN][1000 genomes]
rs10094469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095347	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10097767	0.96[EUR][1000 genomes]
rs10109105	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10111058	0.96[EUR][1000 genomes]
rs1497031	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925397	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16925418	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16925420	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17271634	0.85[EUR][1000 genomes]
rs1995941	0.94[EUR][1000 genomes]
rs28445557	0.96[EUR][1000 genomes]
rs28626870	0.96[EUR][1000 genomes]
rs28673143	0.87[EUR][1000 genomes]
rs28834130	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29001471	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55827533	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56933815	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7822560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828325	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7832437	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7837720	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60828400-60832200	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:60828600-60834800	Weak transcription	Fetal Stomach	stomach
3	chr8:60828800-60834000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:60830000-60834000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:60830000-60834200	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:60830200-60833600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:60830600-60831800	Weak transcription	GM12878-XiMat	blood
8	chr8:60830800-60832600	Enhancers	Primary B cells from cord blood	blood
9	chr8:60831200-60833000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr8:60831400-60832000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr8:60831400-60833000	Enhancers	HUVEC	blood vessel
12	chr8:60831600-60832000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr8:60831600-60833000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:60831600-60833600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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