Variant report

Variant	rs28673143
Chromosome Location	chr8:60857845-60857846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10081579	0.95[ASN][1000 genomes]
rs10086808	0.85[EUR][1000 genomes]
rs10094469	0.87[EUR][1000 genomes]
rs10095347	0.85[EUR][1000 genomes]
rs10097767	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10098915	0.95[ASN][1000 genomes]
rs10109105	0.87[EUR][1000 genomes]
rs10111058	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10957118	0.95[ASN][1000 genomes]
rs1497031	0.87[EUR][1000 genomes]
rs16925397	0.85[EUR][1000 genomes]
rs16925418	0.89[EUR][1000 genomes]
rs17271634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995941	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28445557	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28626870	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28668089	0.95[ASN][1000 genomes]
rs28690268	0.95[ASN][1000 genomes]
rs28834130	0.87[EUR][1000 genomes]
rs29001471	0.85[EUR][1000 genomes]
rs56933815	0.85[EUR][1000 genomes]
rs57344747	0.95[ASN][1000 genomes]
rs62512089	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6997337	0.95[ASN][1000 genomes]
rs6998079	0.95[ASN][1000 genomes]
rs72659716	0.95[ASN][1000 genomes]
rs72659731	0.95[ASN][1000 genomes]
rs72659733	0.95[ASN][1000 genomes]
rs72659760	0.95[ASN][1000 genomes]
rs72659762	0.95[ASN][1000 genomes]
rs72659763	0.95[ASN][1000 genomes]
rs72659765	0.95[ASN][1000 genomes]
rs72659799	0.95[ASN][1000 genomes]
rs72659801	0.95[ASN][1000 genomes]
rs72659802	0.95[ASN][1000 genomes]
rs72661403	0.95[ASN][1000 genomes]
rs72661404	0.95[ASN][1000 genomes]
rs72661406	0.95[ASN][1000 genomes]
rs72661410	0.95[ASN][1000 genomes]
rs72661416	0.95[ASN][1000 genomes]
rs72661421	0.95[ASN][1000 genomes]
rs72661426	0.95[ASN][1000 genomes]
rs72661427	0.95[ASN][1000 genomes]
rs72661442	0.95[ASN][1000 genomes]
rs72661445	0.95[ASN][1000 genomes]
rs72661495	0.95[ASN][1000 genomes]
rs72663207	0.95[ASN][1000 genomes]
rs72663214	0.95[ASN][1000 genomes]
rs72663216	0.95[ASN][1000 genomes]
rs72663221	0.95[ASN][1000 genomes]
rs72663222	0.95[ASN][1000 genomes]
rs72663223	0.95[ASN][1000 genomes]
rs7819235	0.87[EUR][1000 genomes]
rs7822560	0.85[EUR][1000 genomes]
rs7828325	0.87[EUR][1000 genomes]
rs7832437	0.85[EUR][1000 genomes]
rs7833035	0.95[ASN][1000 genomes]
rs7833043	0.95[ASN][1000 genomes]
rs7834199	0.95[ASN][1000 genomes]
rs7837331	0.95[ASN][1000 genomes]
rs7837720	0.86[EUR][1000 genomes]
rs7838137	0.95[ASN][1000 genomes]
rs9650196	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60857400-60858400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:60857800-60858400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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