Variant report

Variant	rs7822867
Chromosome Location	chr8:67245848-67245849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10109505	0.82[EUR][1000 genomes]
rs1080634	0.81[EUR][1000 genomes]
rs16932810	0.95[EUR][1000 genomes]
rs17319640	0.80[EUR][1000 genomes]
rs28371959	0.84[EUR][1000 genomes]
rs28536124	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4324908	0.85[EUR][1000 genomes]
rs55804693	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56336230	0.94[EUR][1000 genomes]
rs6472266	0.80[EUR][1000 genomes]
rs6981785	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7001956	0.89[EUR][1000 genomes]
rs7010677	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7011259	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7015255	1.00[JPT][hapmap]
rs73691523	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7839868	0.94[EUR][1000 genomes]
rs949987	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7822867	ADHFE1	cis	parietal	SCAN
rs7822867	ADHFE1	cis	Skin Sun Exposed Lower leg	GTEx
rs7822867	YPEL1	cis	Cerebellum	GTEx
rs7822867	ADHFE1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67245600-67246000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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