Variant report

Variant	rs7839868
Chromosome Location	chr8:67230214-67230215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10100672	0.87[ASN][1000 genomes]
rs10109505	0.82[EUR][1000 genomes]
rs10109796	0.87[ASN][1000 genomes]
rs1080634	0.82[EUR][1000 genomes]
rs12541169	0.84[ASN][1000 genomes]
rs12543948	0.98[ASN][1000 genomes]
rs12546108	0.91[ASN][1000 genomes]
rs12546226	0.86[ASN][1000 genomes]
rs12547088	0.83[ASN][1000 genomes]
rs12548823	0.87[ASN][1000 genomes]
rs12674697	0.86[ASN][1000 genomes]
rs12674856	0.84[ASN][1000 genomes]
rs12676571	0.86[ASN][1000 genomes]
rs12680750	0.86[ASN][1000 genomes]
rs16932794	0.84[ASN][1000 genomes]
rs16932797	0.84[ASN][1000 genomes]
rs16932810	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17319640	0.81[EUR][1000 genomes]
rs28371959	0.85[EUR][1000 genomes]
rs28536124	0.89[EUR][1000 genomes]
rs2884295	0.87[ASN][1000 genomes]
rs2884296	0.86[ASN][1000 genomes]
rs4324908	0.89[EUR][1000 genomes]
rs4737226	0.98[ASN][1000 genomes]
rs4737778	0.87[ASN][1000 genomes]
rs4737781	0.98[ASN][1000 genomes]
rs55804693	0.91[EUR][1000 genomes]
rs56336230	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57145208	0.83[ASN][1000 genomes]
rs58730001	0.86[ASN][1000 genomes]
rs62511883	0.81[ASN][1000 genomes]
rs62511907	0.85[ASN][1000 genomes]
rs6472266	0.84[EUR][1000 genomes]
rs6981785	0.91[EUR][1000 genomes]
rs6986855	0.81[ASN][1000 genomes]
rs7001956	0.86[EUR][1000 genomes]
rs7010677	0.90[EUR][1000 genomes]
rs7010810	0.81[ASN][1000 genomes]
rs7011259	0.90[EUR][1000 genomes]
rs7016951	0.84[ASN][1000 genomes]
rs73691523	0.90[EUR][1000 genomes]
rs7819028	0.86[ASN][1000 genomes]
rs7822867	0.94[EUR][1000 genomes]
rs7830497	0.86[ASN][1000 genomes]
rs7834454	0.86[ASN][1000 genomes]
rs7839082	0.86[ASN][1000 genomes]
rs7840104	0.86[ASN][1000 genomes]
rs7840490	0.86[ASN][1000 genomes]
rs949987	0.90[EUR][1000 genomes]
rs949989	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv6235	chr8:67188081-67232737	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7839868	ADHFE1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67204400-67232200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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