Variant report

Variant	rs7823815
Chromosome Location	chr8:86029806-86029807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86019640..86022185-chr8:86029422..86031547,2	MCF-7	breast:
2	chr8:86023655..86027184-chr8:86028294..86031138,3	K562	blood:

Variant related genes	Relation type
ENSG00000133739	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11261476	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11991718	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913589	1.00[CEU][hapmap]
rs16913598	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs16913602	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs3736038	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150888	0.96[ASN][1000 genomes]
rs4150892	1.00[JPT][hapmap]
rs56257706	1.00[ASN][1000 genomes]
rs61611893	1.00[ASN][1000 genomes]
rs73688678	1.00[ASN][1000 genomes]
rs7830390	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes]
rs7845805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9644809	1.00[ASN][1000 genomes]
rs9650670	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1033160	chr8:86010643-86030560	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	esv1797206	chr8:86023237-86060072	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86020000-86057400	Weak transcription	Small Intestine	intestine
2	chr8:86020200-86032600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:86020200-86042200	Weak transcription	Left Ventricle	heart
4	chr8:86020400-86032400	Weak transcription	Fetal Thymus	thymus
5	chr8:86020400-86034400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:86020400-86043800	Weak transcription	NH-A	brain
7	chr8:86020400-86044400	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:86020400-86048400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:86020400-86048400	Weak transcription	Fetal Stomach	stomach
10	chr8:86020400-86049000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:86020400-86054800	Weak transcription	Lung	lung
12	chr8:86020400-86055400	Weak transcription	Fetal Kidney	kidney
13	chr8:86020400-86055400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:86020400-86056400	Weak transcription	Gastric	stomach
15	chr8:86020400-86057400	Weak transcription	Aorta	Aorta
16	chr8:86020400-86062600	Weak transcription	Pancreas	Pancrea
17	chr8:86020600-86031800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:86020600-86031800	Weak transcription	HMEC	breast
19	chr8:86020600-86032000	Weak transcription	NHEK	skin
20	chr8:86020600-86032400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:86020600-86034400	Weak transcription	Liver	Liver
22	chr8:86020600-86039200	Weak transcription	Adipose Nuclei	Adipose
23	chr8:86020600-86041600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:86020600-86044200	Weak transcription	Primary T cells from cord blood	blood
25	chr8:86020600-86045800	Weak transcription	Thymus	Thymus
26	chr8:86020600-86048800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr8:86020600-86049000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr8:86020600-86049200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:86020600-86052400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:86020600-86054600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:86020600-86058800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr8:86020800-86039000	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:86020800-86050600	Weak transcription	Brain Angular Gyrus	brain
34	chr8:86021000-86032000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:86021000-86034400	Weak transcription	Fetal Lung	lung
36	chr8:86021000-86039800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr8:86021000-86039800	Weak transcription	NHDF-Ad	bronchial
38	chr8:86021000-86046000	Weak transcription	Colon Smooth Muscle	Colon
39	chr8:86021000-86049800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr8:86021200-86034800	Weak transcription	GM12878-XiMat	blood
41	chr8:86021200-86035000	Weak transcription	Fetal Intestine Small	intestine
42	chr8:86021200-86039000	Weak transcription	Fetal Brain Female	brain
43	chr8:86021200-86053600	Weak transcription	Brain Substantia Nigra	brain
44	chr8:86021200-86058800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr8:86021200-86059600	Weak transcription	Fetal Brain Male	brain
46	chr8:86021400-86041800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr8:86021400-86058400	Weak transcription	Brain Germinal Matrix	brain
48	chr8:86021600-86039600	Weak transcription	K562	blood
49	chr8:86021600-86049800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr8:86021800-86045200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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