Variant report

Variant	rs56257706
Chromosome Location	chr8:86079378-86079379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86079223..86081065-chr8:86088171..86090006,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133740	Chromatin interaction
ENSG00000260493	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11261476	1.00[ASN][1000 genomes]
rs11991718	1.00[ASN][1000 genomes]
rs2432069	0.83[EUR][1000 genomes]
rs2432070	0.83[EUR][1000 genomes]
rs2432071	0.83[EUR][1000 genomes]
rs2432075	0.83[EUR][1000 genomes]
rs2432076	0.83[EUR][1000 genomes]
rs2432077	0.83[EUR][1000 genomes]
rs2432078	0.83[EUR][1000 genomes]
rs2432084	0.83[EUR][1000 genomes]
rs2452679	0.83[EUR][1000 genomes]
rs2453870	0.83[EUR][1000 genomes]
rs2466766	0.83[EUR][1000 genomes]
rs2466767	0.83[EUR][1000 genomes]
rs2466770	0.83[EUR][1000 genomes]
rs2466772	0.83[EUR][1000 genomes]
rs3736038	1.00[ASN][1000 genomes]
rs4150842	0.88[AFR][1000 genomes]
rs4150875	0.88[AFR][1000 genomes]
rs4150888	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4150899	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4150963	0.83[EUR][1000 genomes]
rs4150978	0.88[AFR][1000 genomes]
rs58060795	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61611893	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73688678	1.00[ASN][1000 genomes]
rs73688685	0.88[AFR][1000 genomes]
rs73688687	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73688696	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73691803	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73691805	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7823815	1.00[ASN][1000 genomes]
rs7845805	1.00[ASN][1000 genomes]
rs9644809	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650671	0.83[EUR][1000 genomes]
rs9650672	0.83[EUR][1000 genomes]
rs9650673	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv1799571	chr8:86064130-86105803	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86076800-86083000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:86079000-86083800	Weak transcription	GM12878-XiMat	blood
3	chr8:86079200-86084400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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