Variant report

Variant	rs73691803
Chromosome Location	chr8:86201157-86201158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:86176240..86178800-chr8:86200957..86202565,2	MCF-7	breast:
2	chr8:86131309..86134784-chr8:86200962..86204075,3	MCF-7	breast:
3	chr8:86132574..86133932-chr8:86200875..86203499,32	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185015	Chromatin interaction
ENSG00000176731	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12216844	1.00[EUR][1000 genomes]
rs2432069	1.00[EUR][1000 genomes]
rs2432070	1.00[EUR][1000 genomes]
rs2432071	1.00[EUR][1000 genomes]
rs2432075	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2432076	1.00[EUR][1000 genomes]
rs2432077	1.00[EUR][1000 genomes]
rs2432078	1.00[EUR][1000 genomes]
rs2432084	1.00[EUR][1000 genomes]
rs2452678	1.00[EUR][1000 genomes]
rs2452679	1.00[EUR][1000 genomes]
rs2453870	1.00[EUR][1000 genomes]
rs2466766	1.00[EUR][1000 genomes]
rs2466767	1.00[EUR][1000 genomes]
rs2466770	1.00[EUR][1000 genomes]
rs2466772	1.00[EUR][1000 genomes]
rs4150842	0.87[AFR][1000 genomes]
rs4150875	0.87[AFR][1000 genomes]
rs4150888	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4150892	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4150899	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4150963	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4150978	0.87[AFR][1000 genomes]
rs55716338	1.00[AFR][1000 genomes]
rs56000993	1.00[AFR][1000 genomes]
rs56257706	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56391532	1.00[AFR][1000 genomes]
rs56696632	1.00[AFR][1000 genomes]
rs57413097	1.00[AFR][1000 genomes]
rs58060795	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58078635	1.00[AFR][1000 genomes]
rs58532476	1.00[AFR][1000 genomes]
rs58547590	1.00[AFR][1000 genomes]
rs61315346	1.00[AFR][1000 genomes]
rs61611893	1.00[AMR][1000 genomes]
rs73688685	0.87[AFR][1000 genomes]
rs73688687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73688689	1.00[AFR][1000 genomes]
rs73688696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73688700	1.00[AFR][1000 genomes]
rs73691805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73691806	1.00[AFR][1000 genomes]
rs73691808	1.00[AFR][1000 genomes]
rs73691810	1.00[AFR][1000 genomes]
rs73691811	1.00[AFR][1000 genomes]
rs73691812	1.00[AFR][1000 genomes]
rs73691814	1.00[AFR][1000 genomes]
rs73691815	1.00[AFR][1000 genomes]
rs73691817	1.00[AFR][1000 genomes]
rs73691820	1.00[AFR][1000 genomes]
rs73691824	1.00[AFR][1000 genomes]
rs9644809	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9650670	0.89[ASN][1000 genomes]
rs9650671	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9650672	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9650673	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86170800-86204400	Weak transcription	Ovary	ovary
2	chr8:86190000-86201200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:86190200-86203600	Weak transcription	Fetal Stomach	stomach
4	chr8:86190200-86208400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:86190200-86209600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:86190200-86209600	Weak transcription	Gastric	stomach
7	chr8:86191200-86208400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:86196800-86202400	Weak transcription	Fetal Lung	lung
9	chr8:86197200-86211800	Weak transcription	Fetal Intestine Large	intestine
10	chr8:86197400-86225800	Weak transcription	Fetal Intestine Small	intestine
11	chr8:86199800-86205600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links