Variant report

Variant	rs9650671
Chromosome Location	chr8:86220183-86220184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12216844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2432069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2432070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2432071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2432075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2432076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2432077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2432078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2432084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2452678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2452679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2466766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2466767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2466770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2466772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2645048	1.00[AMR][1000 genomes]
rs3736038	1.00[JPT][hapmap]
rs4150888	1.00[EUR][1000 genomes]
rs4150892	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4150899	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4150963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56257706	0.83[EUR][1000 genomes]
rs58060795	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73688687	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73688696	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73691803	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73691805	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7823815	1.00[JPT][hapmap]
rs7845805	1.00[JPT][hapmap]
rs9644809	0.83[EUR][1000 genomes]
rs9650670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9650672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9650673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2761442	chr8:86201657-86230641	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86197400-86225800	Weak transcription	Fetal Intestine Small	intestine
2	chr8:86211600-86222000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:86217400-86221600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:86217600-86229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:86218800-86220800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr8:86219800-86220800	Enhancers	Sigmoid Colon	Sigmoid Colon

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