Variant report

Variant	rs7825039
Chromosome Location	chr8:91544756-91544757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91544462..91546603-chr8:91546788..91549297,3	MCF-7	breast:
2	chr8:91532071..91534513-chr8:91543640..91546018,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10095288	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10098239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10103375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108945	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10109473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114208	0.80[AMR][1000 genomes]
rs12114484	0.80[AMR][1000 genomes]
rs13438978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28370967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28458242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28523713	1.00[EUR][1000 genomes]
rs28571853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625286	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28628063	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28635136	0.96[AFR][1000 genomes]
rs28642916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28646030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28654995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28683694	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28861773	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28884543	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4531005	0.80[AMR][1000 genomes]
rs58288406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59158124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73697715	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73697720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73697729	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91533800-91545800	Weak transcription	HSMMtube	muscle
2	chr8:91543000-91545800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:91543000-91546200	Weak transcription	HUVEC	blood vessel
4	chr8:91543200-91545600	Weak transcription	NHEK	skin
5	chr8:91543200-91545800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:91543200-91545800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:91543200-91545800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:91544200-91544800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:91544400-91544800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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