Variant report

Variant	rs7840544
Chromosome Location	chr8:51657742-51657743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10086876	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10098054	1.00[JPT][hapmap]
rs10099354	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10099939	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10101945	1.00[JPT][hapmap]
rs10481271	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12114158	1.00[JPT][hapmap]
rs12674534	1.00[JPT][hapmap]
rs12676534	0.88[ASN][1000 genomes]
rs12677948	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12678401	0.95[ASN][1000 genomes]
rs12678416	1.00[JPT][hapmap]
rs12678417	1.00[JPT][hapmap]
rs12682636	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1355067	1.00[JPT][hapmap]
rs16915275	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16915315	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16915358	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1911832	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28520704	0.88[ASN][1000 genomes]
rs28830520	0.88[ASN][1000 genomes]
rs28875312	1.00[ASN][1000 genomes]
rs41364346	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4146358	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4146359	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56267139	0.92[ASN][1000 genomes]
rs58540522	0.88[ASN][1000 genomes]
rs59347506	0.95[ASN][1000 genomes]
rs6473289	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6473290	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6473320	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs6473338	1.00[JPT][hapmap]
rs6473339	1.00[JPT][hapmap]
rs6473378	1.00[JPT][hapmap]
rs6473379	1.00[JPT][hapmap]
rs6473380	1.00[JPT][hapmap]
rs6473434	1.00[JPT][hapmap]
rs6985954	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6987141	0.88[ASN][1000 genomes]
rs6988284	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6989519	0.88[ASN][1000 genomes]
rs6992531	0.95[ASN][1000 genomes]
rs6993206	1.00[JPT][hapmap]
rs6996807	1.00[JPT][hapmap]
rs6997493	1.00[JPT][hapmap]
rs6998678	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7003138	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7003165	1.00[JPT][hapmap]
rs7005117	1.00[JPT][hapmap]
rs7009493	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7012353	1.00[JPT][hapmap]
rs7012490	0.88[ASN][1000 genomes]
rs7015560	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7016907	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7017534	0.95[ASN][1000 genomes]
rs7017695	0.92[ASN][1000 genomes]
rs7017813	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7341612	1.00[JPT][hapmap]
rs73569441	0.88[ASN][1000 genomes]
rs73571208	0.95[ASN][1000 genomes]
rs73678648	0.86[EUR][1000 genomes]
rs7814559	1.00[JPT][hapmap]
rs7820529	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7821117	1.00[JPT][hapmap]
rs7821535	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7824055	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7824609	0.88[ASN][1000 genomes]
rs7831414	1.00[JPT][hapmap]
rs7831880	1.00[JPT][hapmap]
rs7832680	1.00[JPT][hapmap]
rs7841003	0.88[ASN][1000 genomes]
rs7843332	1.00[JPT][hapmap]
rs7846084	0.92[ASN][1000 genomes]
rs9298378	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs998000	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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