Variant report

Variant	rs6473434
Chromosome Location	chr8:51767356-51767357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:51767065..51768781-chr8:51770684..51773527,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253340	Chromatin interaction

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10086876	1.00[JPT][hapmap]
rs10088818	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10093941	0.88[ASN][1000 genomes]
rs10098054	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10099354	1.00[JPT][hapmap]
rs10099939	1.00[JPT][hapmap]
rs10101945	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10104579	1.00[ASN][1000 genomes]
rs10108931	0.88[ASN][1000 genomes]
rs10113012	0.88[ASN][1000 genomes]
rs10481269	0.82[JPT][hapmap]
rs10481271	1.00[JPT][hapmap]
rs12114158	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12114583	1.00[ASN][1000 genomes]
rs12114735	1.00[ASN][1000 genomes]
rs12674534	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12677347	0.88[ASN][1000 genomes]
rs12677948	1.00[JPT][hapmap]
rs12678416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12678417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12679277	1.00[ASN][1000 genomes]
rs12682636	1.00[JPT][hapmap]
rs13439381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439385	1.00[ASN][1000 genomes]
rs1355066	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs1355067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16915275	1.00[JPT][hapmap]
rs16915315	1.00[JPT][hapmap]
rs16915358	1.00[JPT][hapmap]
rs16915414	1.00[ASN][1000 genomes]
rs16915418	1.00[ASN][1000 genomes]
rs16915420	1.00[ASN][1000 genomes]
rs16915426	1.00[ASN][1000 genomes]
rs16915511	1.00[ASN][1000 genomes]
rs1905529	0.84[ASN][1000 genomes]
rs1911832	1.00[JPT][hapmap]
rs28392660	0.88[ASN][1000 genomes]
rs28445611	1.00[ASN][1000 genomes]
rs28522969	1.00[ASN][1000 genomes]
rs28544954	1.00[ASN][1000 genomes]
rs28577248	1.00[ASN][1000 genomes]
rs28586607	0.88[ASN][1000 genomes]
rs28605292	1.00[ASN][1000 genomes]
rs28820019	1.00[ASN][1000 genomes]
rs28855797	1.00[ASN][1000 genomes]
rs41364346	1.00[JPT][hapmap]
rs4146358	1.00[JPT][hapmap]
rs4146359	1.00[JPT][hapmap]
rs56902821	1.00[ASN][1000 genomes]
rs57021506	0.88[ASN][1000 genomes]
rs59925681	1.00[ASN][1000 genomes]
rs60438174	1.00[ASN][1000 genomes]
rs6473289	1.00[JPT][hapmap]
rs6473290	1.00[JPT][hapmap]
rs6473320	1.00[JPT][hapmap]
rs6473338	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6473339	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6473378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6473379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6473380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6473406	1.00[ASN][1000 genomes]
rs6473431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6473443	0.98[ASN][1000 genomes]
rs67053119	1.00[ASN][1000 genomes]
rs6982493	0.90[ASN][1000 genomes]
rs6985954	1.00[JPT][hapmap]
rs6987928	0.86[ASN][1000 genomes]
rs6988284	1.00[JPT][hapmap]
rs6993206	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6996600	1.00[ASN][1000 genomes]
rs6996648	0.98[ASN][1000 genomes]
rs6996807	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997145	0.98[ASN][1000 genomes]
rs6997493	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6998678	1.00[JPT][hapmap]
rs7003138	1.00[JPT][hapmap]
rs7003165	1.00[JPT][hapmap]
rs7005117	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7008324	1.00[ASN][1000 genomes]
rs7009255	1.00[ASN][1000 genomes]
rs7009493	1.00[JPT][hapmap]
rs7012353	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7015560	1.00[JPT][hapmap]
rs7015783	1.00[ASN][1000 genomes]
rs7016907	1.00[JPT][hapmap]
rs7017813	1.00[JPT][hapmap]
rs7017944	1.00[ASN][1000 genomes]
rs7341612	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73570300	0.96[ASN][1000 genomes]
rs73572301	1.00[ASN][1000 genomes]
rs73574056	0.90[ASN][1000 genomes]
rs73574081	0.88[ASN][1000 genomes]
rs73575091	1.00[ASN][1000 genomes]
rs73575093	1.00[ASN][1000 genomes]
rs73575102	1.00[ASN][1000 genomes]
rs73576010	0.84[ASN][1000 genomes]
rs73577108	1.00[ASN][1000 genomes]
rs73585313	1.00[ASN][1000 genomes]
rs7814077	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7814559	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7820529	1.00[JPT][hapmap]
rs7821117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7821535	1.00[JPT][hapmap]
rs7824055	1.00[JPT][hapmap]
rs7831414	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831880	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7832680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7837449	1.00[ASN][1000 genomes]
rs7838908	1.00[ASN][1000 genomes]
rs7840544	1.00[JPT][hapmap]
rs7843332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9298378	1.00[JPT][hapmap]
rs998000	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890874	chr8:51681031-51772697	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv890875	chr8:51681031-51780761	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv890876	chr8:51725654-51780761	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv890877	chr8:51733342-51946827	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv890878	chr8:51737153-51796456	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv890879	chr8:51737153-51862244	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv890880	chr8:51737153-51883927	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv890881	chr8:51737153-51946827	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv890882	chr8:51737153-51946827	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv34807	chr8:51737987-51883447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv2756704	chr8:51744861-51779451	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv890883	chr8:51744861-51796456	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv2756812	chr8:51750040-51883407	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv2759614	chr8:51750040-51883407	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv890884	chr8:51750403-51854351	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1015808	chr8:51750738-51859216	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv890885	chr8:51755350-51946827	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv8342	chr8:51759027-51884891	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv818625	chr8:51760410-51883927	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv1030302	chr8:51760429-51881870	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv1026931	chr8:51760429-51883407	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv1027258	chr8:51760429-51887857	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv1033962	chr8:51765543-51859216	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv539609	chr8:51765543-51859216	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51767000-51768800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:51767200-51768000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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