Variant report

Variant	rs73574056
Chromosome Location	chr8:51799916-51799917
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10088818	0.98[ASN][1000 genomes]
rs10093941	0.98[ASN][1000 genomes]
rs10098054	0.90[ASN][1000 genomes]
rs10101945	0.90[ASN][1000 genomes]
rs10104579	0.90[ASN][1000 genomes]
rs10108931	0.98[ASN][1000 genomes]
rs10113012	0.98[ASN][1000 genomes]
rs10504109	0.90[ASN][1000 genomes]
rs12114158	0.90[ASN][1000 genomes]
rs12114583	0.90[ASN][1000 genomes]
rs12114735	0.90[ASN][1000 genomes]
rs12677347	0.98[ASN][1000 genomes]
rs12679277	0.90[ASN][1000 genomes]
rs13439381	0.90[ASN][1000 genomes]
rs13439385	0.90[ASN][1000 genomes]
rs1355066	0.90[ASN][1000 genomes]
rs1355067	0.90[ASN][1000 genomes]
rs16915414	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16915418	0.90[ASN][1000 genomes]
rs16915420	0.90[ASN][1000 genomes]
rs16915426	0.90[ASN][1000 genomes]
rs16915511	0.90[ASN][1000 genomes]
rs1905529	0.94[ASN][1000 genomes]
rs28392660	0.98[ASN][1000 genomes]
rs28445611	0.90[ASN][1000 genomes]
rs28522969	0.90[ASN][1000 genomes]
rs28544954	0.90[ASN][1000 genomes]
rs28577248	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28586607	0.98[ASN][1000 genomes]
rs28605292	0.90[ASN][1000 genomes]
rs28820019	0.90[ASN][1000 genomes]
rs28855797	0.90[ASN][1000 genomes]
rs56902821	0.90[ASN][1000 genomes]
rs57021506	0.98[ASN][1000 genomes]
rs59925681	0.90[ASN][1000 genomes]
rs60438174	0.90[ASN][1000 genomes]
rs6473406	0.90[ASN][1000 genomes]
rs6473431	0.90[ASN][1000 genomes]
rs6473434	0.90[ASN][1000 genomes]
rs6473443	0.92[ASN][1000 genomes]
rs67053119	0.90[ASN][1000 genomes]
rs6982493	1.00[ASN][1000 genomes]
rs6987928	0.96[ASN][1000 genomes]
rs6996600	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6996648	0.88[ASN][1000 genomes]
rs6996807	0.90[ASN][1000 genomes]
rs6997145	0.92[ASN][1000 genomes]
rs6997493	0.90[ASN][1000 genomes]
rs7005117	0.90[ASN][1000 genomes]
rs7008324	0.90[ASN][1000 genomes]
rs7009255	0.90[ASN][1000 genomes]
rs7015783	0.90[ASN][1000 genomes]
rs7017944	0.90[ASN][1000 genomes]
rs7341612	0.90[ASN][1000 genomes]
rs73570300	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73572301	0.90[ASN][1000 genomes]
rs73574081	0.98[ASN][1000 genomes]
rs73575091	0.90[ASN][1000 genomes]
rs73575093	0.90[ASN][1000 genomes]
rs73575102	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73576010	0.94[ASN][1000 genomes]
rs73576043	0.90[ASN][1000 genomes]
rs73577108	0.90[ASN][1000 genomes]
rs73585313	0.90[ASN][1000 genomes]
rs7814077	0.92[ASN][1000 genomes]
rs7814559	0.90[ASN][1000 genomes]
rs7831414	0.90[ASN][1000 genomes]
rs7837449	0.90[ASN][1000 genomes]
rs7838908	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890877	chr8:51733342-51946827	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv890879	chr8:51737153-51862244	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv890880	chr8:51737153-51883927	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv890881	chr8:51737153-51946827	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv890882	chr8:51737153-51946827	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv34807	chr8:51737987-51883447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv2756812	chr8:51750040-51883407	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2759614	chr8:51750040-51883407	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv890884	chr8:51750403-51854351	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1015808	chr8:51750738-51859216	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv890885	chr8:51755350-51946827	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv8342	chr8:51759027-51884891	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv818625	chr8:51760410-51883927	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1030302	chr8:51760429-51881870	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv1026931	chr8:51760429-51883407	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1027258	chr8:51760429-51887857	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv1033962	chr8:51765543-51859216	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv539609	chr8:51765543-51859216	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv2753238	chr8:51776447-51883447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51798000-51800000	Enhancers	Dnd41	blood
2	chr8:51798400-51800000	Enhancers	Fetal Muscle Leg	muscle
3	chr8:51798800-51800000	Enhancers	Fetal Brain Male	brain
4	chr8:51798800-51800000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links