Variant report

Variant	rs1905529
Chromosome Location	chr8:51823442-51823443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10088818	0.96[ASN][1000 genomes]
rs10093941	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10098054	0.88[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10099939	1.00[JPT][hapmap]
rs10101945	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10104579	0.84[ASN][1000 genomes]
rs10108931	0.96[ASN][1000 genomes]
rs10113012	0.96[ASN][1000 genomes]
rs10504109	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12114158	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12114583	0.84[ASN][1000 genomes]
rs12114735	0.84[ASN][1000 genomes]
rs12674534	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12677347	0.96[ASN][1000 genomes]
rs12678416	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12678417	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12679277	0.84[ASN][1000 genomes]
rs12682636	1.00[JPT][hapmap]
rs13439381	0.84[ASN][1000 genomes]
rs13439385	0.84[ASN][1000 genomes]
rs1355066	0.88[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1355067	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16915315	1.00[JPT][hapmap]
rs16915358	1.00[JPT][hapmap]
rs16915414	0.84[ASN][1000 genomes]
rs16915418	0.84[ASN][1000 genomes]
rs16915420	0.84[ASN][1000 genomes]
rs16915426	0.84[ASN][1000 genomes]
rs16915511	0.84[ASN][1000 genomes]
rs1911832	1.00[JPT][hapmap]
rs28392660	0.96[ASN][1000 genomes]
rs28445611	0.84[ASN][1000 genomes]
rs28522969	0.84[ASN][1000 genomes]
rs28544954	0.84[ASN][1000 genomes]
rs28577248	0.84[ASN][1000 genomes]
rs28586607	0.96[ASN][1000 genomes]
rs28605292	0.84[ASN][1000 genomes]
rs28820019	0.84[ASN][1000 genomes]
rs28855797	0.84[ASN][1000 genomes]
rs41364346	1.00[JPT][hapmap]
rs4146358	1.00[JPT][hapmap]
rs4146359	1.00[JPT][hapmap]
rs56902821	0.84[ASN][1000 genomes]
rs57021506	0.96[ASN][1000 genomes]
rs59208666	0.91[EUR][1000 genomes]
rs59925681	0.84[ASN][1000 genomes]
rs60438174	0.84[ASN][1000 genomes]
rs6473320	1.00[JPT][hapmap]
rs6473338	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6473339	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6473378	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6473379	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6473380	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6473406	0.84[ASN][1000 genomes]
rs6473431	0.84[ASN][1000 genomes]
rs6473434	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6473443	0.86[ASN][1000 genomes]
rs67053119	0.84[ASN][1000 genomes]
rs6982493	0.94[ASN][1000 genomes]
rs6985954	1.00[JPT][hapmap]
rs6987928	0.94[ASN][1000 genomes]
rs6993206	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6996600	0.84[ASN][1000 genomes]
rs6996648	0.82[ASN][1000 genomes]
rs6996807	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6997145	0.86[ASN][1000 genomes]
rs6997493	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6998678	1.00[JPT][hapmap]
rs7003138	1.00[JPT][hapmap]
rs7003165	1.00[JPT][hapmap]
rs7005117	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7008324	0.84[ASN][1000 genomes]
rs7009255	0.84[ASN][1000 genomes]
rs7012353	0.88[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs7015783	0.84[ASN][1000 genomes]
rs7017944	0.84[ASN][1000 genomes]
rs72647146	0.84[EUR][1000 genomes]
rs72647149	0.84[EUR][1000 genomes]
rs72647160	0.84[EUR][1000 genomes]
rs72647162	0.84[EUR][1000 genomes]
rs72647180	0.84[EUR][1000 genomes]
rs72647182	0.84[EUR][1000 genomes]
rs72647187	0.84[EUR][1000 genomes]
rs72647190	0.84[EUR][1000 genomes]
rs72647192	0.84[EUR][1000 genomes]
rs72647202	0.86[EUR][1000 genomes]
rs72649620	0.91[EUR][1000 genomes]
rs72649643	0.90[EUR][1000 genomes]
rs7341612	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs73572301	0.84[ASN][1000 genomes]
rs73574056	0.94[ASN][1000 genomes]
rs73574081	0.96[ASN][1000 genomes]
rs73575091	0.84[ASN][1000 genomes]
rs73575093	0.84[ASN][1000 genomes]
rs73575102	0.84[ASN][1000 genomes]
rs73576010	1.00[ASN][1000 genomes]
rs73576043	0.96[ASN][1000 genomes]
rs73576101	0.91[EUR][1000 genomes]
rs73577108	0.84[ASN][1000 genomes]
rs73585313	0.84[ASN][1000 genomes]
rs7814077	0.86[ASN][1000 genomes]
rs7814559	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7820529	1.00[JPT][hapmap]
rs7821117	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7831414	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7831880	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7832680	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7837449	0.84[ASN][1000 genomes]
rs7838908	0.84[ASN][1000 genomes]
rs7840544	1.00[JPT][hapmap]
rs7843332	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9298378	1.00[JPT][hapmap]
rs998000	0.88[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890877	chr8:51733342-51946827	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv890879	chr8:51737153-51862244	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv890880	chr8:51737153-51883927	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv890881	chr8:51737153-51946827	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv890882	chr8:51737153-51946827	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv34807	chr8:51737987-51883447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv2756812	chr8:51750040-51883407	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2759614	chr8:51750040-51883407	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv890884	chr8:51750403-51854351	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1015808	chr8:51750738-51859216	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv890885	chr8:51755350-51946827	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv8342	chr8:51759027-51884891	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv818625	chr8:51760410-51883927	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv1030302	chr8:51760429-51881870	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv1026931	chr8:51760429-51883407	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1027258	chr8:51760429-51887857	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv1033962	chr8:51765543-51859216	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv539609	chr8:51765543-51859216	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv2753238	chr8:51776447-51883447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv890886	chr8:51802055-51946827	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv890887	chr8:51816730-51929846	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv890888	chr8:51820294-51883927	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv890889	chr8:51820294-51946827	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51823400-51823600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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