Variant report

Variant	rs10481269
Chromosome Location	chr8:51607738-51607739
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 182 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs10086876	0.82[JPT][hapmap]
rs10087228	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10087953	0.89[ASN][1000 genomes]
rs10097209	0.94[ASN][1000 genomes]
rs10097404	0.94[ASN][1000 genomes]
rs10098054	0.82[JPT][hapmap]
rs10099033	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10099354	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10099939	0.82[JPT][hapmap]
rs10101076	0.99[ASN][1000 genomes]
rs10101945	0.82[JPT][hapmap]
rs10110050	0.90[ASN][1000 genomes]
rs10111045	0.81[ASN][1000 genomes]
rs10216649	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10429378	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10481271	0.82[JPT][hapmap]
rs10958023	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10958026	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10958028	0.84[EUR][1000 genomes]
rs10958055	0.86[EUR][1000 genomes]
rs10958056	0.85[EUR][1000 genomes]
rs10958059	0.87[EUR][1000 genomes]
rs10958060	0.87[EUR][1000 genomes]
rs10958061	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10958065	0.93[ASN][1000 genomes]
rs10958066	0.92[ASN][1000 genomes]
rs11774604	0.92[EUR][1000 genomes]
rs11774637	0.93[EUR][1000 genomes]
rs11779072	0.90[EUR][1000 genomes]
rs11785968	0.99[ASN][1000 genomes]
rs11984449	0.87[EUR][1000 genomes]
rs11991401	0.92[EUR][1000 genomes]
rs11992671	0.89[EUR][1000 genomes]
rs11993958	0.86[EUR][1000 genomes]
rs11996267	0.84[EUR][1000 genomes]
rs11996302	0.84[EUR][1000 genomes]
rs11997970	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11998686	0.87[EUR][1000 genomes]
rs12375352	0.87[EUR][1000 genomes]
rs12544285	0.89[EUR][1000 genomes]
rs12546823	0.89[EUR][1000 genomes]
rs12548479	0.89[EUR][1000 genomes]
rs12674534	0.82[JPT][hapmap]
rs12677948	0.82[JPT][hapmap]
rs12678416	0.82[JPT][hapmap]
rs12678417	0.82[JPT][hapmap]
rs12681280	0.93[ASN][1000 genomes]
rs12681303	0.94[ASN][1000 genomes]
rs13250468	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13251712	0.85[ASN][1000 genomes]
rs13251980	0.98[ASN][1000 genomes]
rs13257541	0.94[EUR][1000 genomes]
rs13258440	0.93[EUR][1000 genomes]
rs13261218	0.84[EUR][1000 genomes]
rs13261493	0.81[ASN][1000 genomes]
rs13263172	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13264074	0.89[EUR][1000 genomes]
rs13264295	0.84[EUR][1000 genomes]
rs13270091	0.89[EUR][1000 genomes]
rs13271305	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1355066	0.82[JPT][hapmap]
rs1355067	0.82[JPT][hapmap]
rs1396377	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1472907	0.90[ASN][1000 genomes]
rs1508621	0.94[ASN][1000 genomes]
rs1508622	0.93[ASN][1000 genomes]
rs1508623	0.86[ASN][1000 genomes]
rs1508624	0.92[EUR][1000 genomes]
rs1567311	0.96[ASN][1000 genomes]
rs16915257	0.94[EUR][1000 genomes]
rs16915261	0.86[EUR][1000 genomes]
rs16915275	0.82[JPT][hapmap]
rs16915285	0.86[EUR][1000 genomes]
rs16915315	0.82[JPT][hapmap]
rs16915320	0.89[EUR][1000 genomes]
rs16915358	0.82[JPT][hapmap]
rs16915417	0.81[ASN][1000 genomes]
rs1911832	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1911835	0.93[ASN][1000 genomes]
rs2048208	0.87[EUR][1000 genomes]
rs2170856	0.81[ASN][1000 genomes]
rs2170857	0.81[ASN][1000 genomes]
rs2202797	0.90[ASN][1000 genomes]
rs2392761	0.94[ASN][1000 genomes]
rs28432973	0.83[EUR][1000 genomes]
rs28470779	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28647321	0.96[ASN][1000 genomes]
rs28683156	0.83[ASN][1000 genomes]
rs28815525	0.94[ASN][1000 genomes]
rs34316210	0.94[EUR][1000 genomes]
rs34486025	0.94[ASN][1000 genomes]
rs34871864	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35521388	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35751430	0.92[EUR][1000 genomes]
rs3999808	0.94[ASN][1000 genomes]
rs41364346	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs4146358	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs4146359	0.82[JPT][hapmap]
rs4242462	0.86[ASN][1000 genomes]
rs4382493	0.81[ASN][1000 genomes]
rs4422788	0.81[ASN][1000 genomes]
rs4873153	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873155	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62516802	0.84[EUR][1000 genomes]
rs62516843	0.84[EUR][1000 genomes]
rs6473289	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6473290	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6473292	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6473319	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6473320	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6473338	0.82[JPT][hapmap]
rs6473339	0.82[JPT][hapmap]
rs6473378	0.82[JPT][hapmap]
rs6473379	0.82[JPT][hapmap]
rs6473380	0.82[JPT][hapmap]
rs6473434	0.82[JPT][hapmap]
rs66730072	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67434971	0.89[EUR][1000 genomes]
rs67729017	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67769978	0.89[EUR][1000 genomes]
rs6981207	0.81[ASN][1000 genomes]
rs6981429	0.81[ASN][1000 genomes]
rs6985321	0.81[ASN][1000 genomes]
rs6985954	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6987633	0.90[ASN][1000 genomes]
rs6988284	0.82[JPT][hapmap]
rs6990102	0.84[EUR][1000 genomes]
rs6991518	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6992341	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6992551	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6993206	0.82[JPT][hapmap]
rs6996807	0.82[JPT][hapmap]
rs6997493	0.82[JPT][hapmap]
rs6998678	0.82[JPT][hapmap]
rs6999211	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7002119	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7003138	0.82[JPT][hapmap]
rs7005117	0.82[JPT][hapmap]
rs7009493	0.82[JPT][hapmap]
rs7009895	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7011647	0.93[ASN][1000 genomes]
rs7012338	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7013183	0.94[ASN][1000 genomes]
rs7013366	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7015370	0.81[ASN][1000 genomes]
rs7015560	0.82[JPT][hapmap]
rs7016907	0.82[JPT][hapmap]
rs7016914	0.86[EUR][1000 genomes]
rs7017813	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7018197	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs713179	0.94[EUR][1000 genomes]
rs7341612	1.00[JPT][hapmap]
rs7460470	0.94[ASN][1000 genomes]
rs7812344	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7814559	0.82[JPT][hapmap]
rs7816076	0.84[EUR][1000 genomes]
rs7820529	0.82[JPT][hapmap]
rs7820724	0.81[ASN][1000 genomes]
rs7821117	0.82[JPT][hapmap]
rs7821535	0.82[JPT][hapmap]
rs7822224	0.93[ASN][1000 genomes]
rs7823683	0.86[EUR][1000 genomes]
rs7829079	0.94[ASN][1000 genomes]
rs7831359	0.87[EUR][1000 genomes]
rs7831414	0.82[JPT][hapmap]
rs7831880	0.82[JPT][hapmap]
rs7832680	0.82[JPT][hapmap]
rs7833823	0.81[ASN][1000 genomes]
rs7834256	0.93[ASN][1000 genomes]
rs7834585	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7843332	0.82[JPT][hapmap]
rs7844393	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7845831	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9298378	0.82[JPT][hapmap]
rs998000	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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