Variant report

Variant	rs1508624
Chromosome Location	chr8:51594714-51594715
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:51590048..51591794-chr8:51592149..51596284,3	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10087228	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10099033	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1018207	1.00[CEU][hapmap]
rs10216649	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10429378	0.97[EUR][1000 genomes]
rs10958023	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs10958026	0.90[EUR][1000 genomes]
rs10958028	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10958040	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10958055	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10958056	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10958059	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10958060	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10958061	0.89[EUR][1000 genomes]
rs10958113	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs10958117	0.83[JPT][hapmap]
rs11774604	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11774637	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11779072	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11783089	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs11984449	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11991401	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11992671	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11993958	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11996267	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996302	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997213	0.95[CEU][hapmap]
rs11997970	0.89[EUR][1000 genomes]
rs11998686	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12375352	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12544285	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12546823	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12548479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13250468	0.97[EUR][1000 genomes]
rs13252863	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs13257541	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13258440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13261218	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263172	0.97[EUR][1000 genomes]
rs13264074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13264295	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13270091	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13271305	0.85[EUR][1000 genomes]
rs1396377	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs16915257	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16915261	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16915285	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16915320	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1911836	0.86[JPT][hapmap]
rs2048208	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28432973	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28470779	0.89[EUR][1000 genomes]
rs34316210	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34473019	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs34871864	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs35521388	0.89[EUR][1000 genomes]
rs35751430	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873153	0.87[EUR][1000 genomes]
rs4873155	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs62516802	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62516843	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62516846	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6473292	0.96[EUR][1000 genomes]
rs6473319	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs66730072	0.88[EUR][1000 genomes]
rs67434971	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67729017	0.87[EUR][1000 genomes]
rs67769978	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6990102	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6991518	0.96[EUR][1000 genomes]
rs6992341	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6992551	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6999211	0.89[EUR][1000 genomes]
rs7002119	0.94[EUR][1000 genomes]
rs7009895	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7012338	0.94[EUR][1000 genomes]
rs7013366	0.89[EUR][1000 genomes]
rs7016914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7018197	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs713179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7812344	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs7816076	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823683	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7831359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7831651	0.83[JPT][hapmap]
rs7832799	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs7834585	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7844393	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs7845831	0.86[EUR][1000 genomes]
rs906656	0.86[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51570200-51595200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51592000-51596000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:51594400-51594800	Enhancers	NH-A	brain
4	chr8:51594400-51596200	Enhancers	Liver	Liver
5	chr8:51594600-51595200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:51594600-51596400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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