Variant report

Variant	rs906656
Chromosome Location	chr8:51642452-51642453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10087953	0.92[EUR][1000 genomes]
rs10097209	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10097404	0.86[EUR][1000 genomes]
rs10101076	0.95[EUR][1000 genomes]
rs10111045	0.87[EUR][1000 genomes]
rs10958040	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10958055	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10958056	0.82[ASN][1000 genomes]
rs10958059	0.83[ASN][1000 genomes]
rs10958060	0.83[ASN][1000 genomes]
rs10958065	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10958066	0.82[EUR][1000 genomes]
rs10958080	1.00[CEU][hapmap]
rs10958113	0.88[JPT][hapmap]
rs10958115	0.92[CEU][hapmap]
rs10958117	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs11774637	0.83[YRI][hapmap]
rs11775633	0.92[CEU][hapmap]
rs11779072	0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs11783089	0.88[JPT][hapmap]
rs11785968	0.83[EUR][1000 genomes]
rs11984449	0.83[ASN][1000 genomes]
rs11986411	0.92[CEU][hapmap];0.92[TSI][hapmap]
rs11992671	0.83[ASN][1000 genomes]
rs11993958	0.83[ASN][1000 genomes]
rs11998686	0.83[ASN][1000 genomes]
rs12375352	0.86[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12544285	0.83[ASN][1000 genomes]
rs12546823	0.86[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs12548479	0.85[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12681303	0.89[EUR][1000 genomes]
rs13251980	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs13252863	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13254513	0.87[TSI][hapmap]
rs13258440	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs13264074	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs13269724	0.96[CEU][hapmap]
rs13270091	0.83[ASN][1000 genomes]
rs1472907	0.90[EUR][1000 genomes]
rs1508621	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1508622	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1508623	0.83[CEU][hapmap]
rs1508624	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1567311	1.00[CEU][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs16915261	0.83[ASN][1000 genomes]
rs16915285	0.83[ASN][1000 genomes]
rs16915320	0.83[ASN][1000 genomes]
rs1911830	0.83[CEU][hapmap];0.87[TSI][hapmap]
rs1911835	0.84[EUR][1000 genomes]
rs1911836	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs2048208	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.81[ASN][1000 genomes]
rs2202797	0.92[CEU][hapmap]
rs28647321	0.86[EUR][1000 genomes]
rs28683156	0.81[EUR][1000 genomes]
rs28815525	0.91[EUR][1000 genomes]
rs34473019	0.88[JPT][hapmap]
rs34486025	0.86[EUR][1000 genomes]
rs3999808	0.87[EUR][1000 genomes]
rs4242462	0.84[CEU][hapmap]
rs4422788	0.92[CEU][hapmap]
rs6473337	0.84[CEU][hapmap]
rs67434971	0.83[ASN][1000 genomes]
rs67769978	0.83[ASN][1000 genomes]
rs6987633	0.80[EUR][1000 genomes]
rs6988562	0.92[CEU][hapmap]
rs6988854	1.00[CEU][hapmap]
rs6990102	0.86[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap]
rs7011647	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7016914	0.86[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs713179	0.86[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap]
rs717509	0.84[CEU][hapmap]
rs7460470	0.86[EUR][1000 genomes]
rs7822224	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs7823683	0.83[ASN][1000 genomes]
rs7829079	0.89[EUR][1000 genomes]
rs7831359	0.86[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs7831651	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs7832799	0.88[JPT][hapmap]
rs7834256	0.95[EUR][1000 genomes]
rs7846699	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51608000-51648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51642400-51643200	Enhancers	Brain Germinal Matrix	brain

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