Variant report

Variant	rs12544285
Chromosome Location	chr8:51640611-51640612
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10087228	0.93[EUR][1000 genomes]
rs10099033	0.93[EUR][1000 genomes]
rs10216649	0.93[EUR][1000 genomes]
rs10429378	0.89[EUR][1000 genomes]
rs10958023	0.83[EUR][1000 genomes]
rs10958026	0.83[EUR][1000 genomes]
rs10958028	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10958055	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958056	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10958059	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958060	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958061	0.97[EUR][1000 genomes]
rs11774604	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11774637	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11776122	0.83[EUR][1000 genomes]
rs11779072	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984449	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991401	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11992671	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993958	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996267	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11996302	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11997970	0.82[EUR][1000 genomes]
rs11998686	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375352	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546823	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548479	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250468	0.89[EUR][1000 genomes]
rs13252863	1.00[ASN][1000 genomes]
rs13257541	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13258440	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13261218	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13263172	0.89[EUR][1000 genomes]
rs13264074	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264295	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13270091	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271305	0.92[EUR][1000 genomes]
rs1396377	0.89[EUR][1000 genomes]
rs1508624	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16915257	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16915261	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915285	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048208	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28432973	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28470779	0.97[EUR][1000 genomes]
rs34316210	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34871864	0.82[EUR][1000 genomes]
rs35521388	0.97[EUR][1000 genomes]
rs35751430	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873153	0.82[EUR][1000 genomes]
rs4873155	0.92[EUR][1000 genomes]
rs62516802	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62516843	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6473292	0.90[EUR][1000 genomes]
rs6473319	0.97[EUR][1000 genomes]
rs66730072	0.96[EUR][1000 genomes]
rs67434971	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67729017	0.85[EUR][1000 genomes]
rs67769978	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990102	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6991518	0.90[EUR][1000 genomes]
rs6992341	0.97[EUR][1000 genomes]
rs6992551	0.94[EUR][1000 genomes]
rs6999211	0.82[EUR][1000 genomes]
rs7002119	0.90[EUR][1000 genomes]
rs7009895	0.96[EUR][1000 genomes]
rs7012338	0.88[EUR][1000 genomes]
rs7013366	0.82[EUR][1000 genomes]
rs7016914	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018197	0.93[EUR][1000 genomes]
rs713179	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812344	0.93[EUR][1000 genomes]
rs7816076	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7823683	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831359	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834585	0.93[EUR][1000 genomes]
rs7844393	0.82[EUR][1000 genomes]
rs7845831	0.93[EUR][1000 genomes]
rs906656	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51608000-51648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51639200-51642400	Weak transcription	Brain Germinal Matrix	brain

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