Variant report

Variant	rs7816076
Chromosome Location	chr8:51588663-51588664
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10087228	0.80[EUR][1000 genomes]
rs10099033	0.80[EUR][1000 genomes]
rs10216649	0.80[EUR][1000 genomes]
rs10429378	0.89[EUR][1000 genomes]
rs10958023	0.98[EUR][1000 genomes]
rs10958026	0.98[EUR][1000 genomes]
rs10958028	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10958055	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10958056	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10958059	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10958060	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10958061	0.82[EUR][1000 genomes]
rs11774604	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11774637	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11779072	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11984449	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11991401	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11992671	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11993958	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11996267	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11996302	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11997970	0.97[EUR][1000 genomes]
rs11998686	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12375352	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12544285	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12546823	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12548479	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13250468	0.89[EUR][1000 genomes]
rs13252863	0.82[ASN][1000 genomes]
rs13257541	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13258440	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13261218	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13263172	0.89[EUR][1000 genomes]
rs13264074	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13264295	0.82[EUR][1000 genomes]
rs13270091	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1396377	0.89[EUR][1000 genomes]
rs1508624	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16915257	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16915261	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16915285	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16915320	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2048208	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28470779	0.82[EUR][1000 genomes]
rs34316210	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34871864	0.97[EUR][1000 genomes]
rs35521388	0.82[EUR][1000 genomes]
rs35751430	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873153	0.95[EUR][1000 genomes]
rs4873155	0.86[EUR][1000 genomes]
rs62516802	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62516843	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62516846	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6473292	0.88[EUR][1000 genomes]
rs6473319	0.82[EUR][1000 genomes]
rs66730072	0.81[EUR][1000 genomes]
rs67434971	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67769978	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6990102	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6991518	0.88[EUR][1000 genomes]
rs6992341	0.82[EUR][1000 genomes]
rs6999211	0.97[EUR][1000 genomes]
rs7002119	0.86[EUR][1000 genomes]
rs7009895	0.81[EUR][1000 genomes]
rs7012338	0.86[EUR][1000 genomes]
rs7013366	0.97[EUR][1000 genomes]
rs7016914	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs713179	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7812344	0.80[EUR][1000 genomes]
rs7823683	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7831359	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7834585	0.80[EUR][1000 genomes]
rs7844393	0.97[EUR][1000 genomes]
rs7845831	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv968558	chr8:51576756-51590786	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51570200-51595200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51588600-51589000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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