Variant report

Variant	rs10958060
Chromosome Location	chr8:51635309-51635310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10087228	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10099033	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1018207	1.00[CEU][hapmap]
rs10216649	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10429378	0.88[EUR][1000 genomes]
rs10958023	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10958026	0.81[EUR][1000 genomes]
rs10958028	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10958040	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs10958055	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958056	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10958059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958061	0.95[EUR][1000 genomes]
rs10958113	0.95[CEU][hapmap]
rs11774604	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11774637	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11776122	0.84[EUR][1000 genomes]
rs11779072	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783089	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs11984449	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991401	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11992671	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993958	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996267	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11996302	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11997213	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs11997970	0.80[EUR][1000 genomes]
rs11998686	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375352	0.95[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12544285	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546823	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548479	1.00[CEU][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250468	0.88[EUR][1000 genomes]
rs13252863	1.00[ASN][1000 genomes]
rs13257541	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13258440	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13261218	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13263172	0.88[EUR][1000 genomes]
rs13264074	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264295	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13270091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271305	0.94[EUR][1000 genomes]
rs1396377	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1508624	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16915257	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16915261	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915285	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048208	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28432973	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28470779	0.95[EUR][1000 genomes]
rs34316210	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34473019	0.95[CEU][hapmap]
rs34871864	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs35521388	0.95[EUR][1000 genomes]
rs35751430	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873153	0.80[EUR][1000 genomes]
rs4873155	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs62516802	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62516843	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6473292	0.88[EUR][1000 genomes]
rs6473319	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs66730072	0.94[EUR][1000 genomes]
rs67434971	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67729017	0.83[EUR][1000 genomes]
rs67769978	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990102	0.91[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6991518	0.88[EUR][1000 genomes]
rs6992341	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6992551	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6999211	0.80[EUR][1000 genomes]
rs7002119	0.88[EUR][1000 genomes]
rs7009895	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7012338	0.87[EUR][1000 genomes]
rs7013366	0.80[EUR][1000 genomes]
rs7016914	1.00[CEU][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018197	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs713179	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812344	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs7816076	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7823683	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831359	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832799	0.95[CEU][hapmap]
rs7834585	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7844393	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs7845831	0.95[EUR][1000 genomes]
rs906656	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51608000-51648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51634200-51637200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:51634600-51640000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:51634600-51640000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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