Variant report

Variant	rs11997213
Chromosome Location	chr8:51677135-51677136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10087228	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10099033	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1018207	0.95[CEU][hapmap]
rs10216649	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10958023	0.86[CEU][hapmap]
rs10958040	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs10958055	0.95[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs10958056	0.81[EUR][1000 genomes]
rs10958059	0.81[EUR][1000 genomes]
rs10958060	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs10958061	0.82[EUR][1000 genomes]
rs10958113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10958117	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11774637	0.95[CEU][hapmap]
rs11776122	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779072	0.95[CEU][hapmap]
rs11783089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984449	0.81[EUR][1000 genomes]
rs11989031	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989688	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993958	0.82[EUR][1000 genomes]
rs11994756	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11998393	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998686	0.81[EUR][1000 genomes]
rs12375352	0.90[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs12542977	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12546823	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs12548479	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs12675337	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13252863	0.83[JPT][hapmap]
rs13258440	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs13264074	0.95[CEU][hapmap];0.83[JPT][hapmap]
rs13264295	0.81[EUR][1000 genomes]
rs13267665	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13271305	0.83[EUR][1000 genomes]
rs13271648	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1385049	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1396377	0.95[CEU][hapmap]
rs1484132	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1508624	0.95[CEU][hapmap]
rs16915261	0.82[EUR][1000 genomes]
rs16915285	0.82[EUR][1000 genomes]
rs1843079	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2048208	0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs2069312	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28470779	0.82[EUR][1000 genomes]
rs34473019	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs34871864	0.86[CEU][hapmap]
rs35108997	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35521388	0.82[EUR][1000 genomes]
rs4873155	0.95[CEU][hapmap]
rs4873480	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55818362	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6473319	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs66730072	0.82[EUR][1000 genomes]
rs6990102	0.86[CEU][hapmap]
rs6992341	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs6992551	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs7009895	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7016914	0.95[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs7018197	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs713179	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs7812344	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs7823683	0.82[EUR][1000 genomes]
rs7831359	0.95[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7831651	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7832799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs7834585	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs7844393	0.86[CEU][hapmap]
rs7845831	0.85[EUR][1000 genomes]
rs9650276	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv981937	chr8:51666570-51678660	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51674000-51682800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links