Variant report

Variant	rs10958117
Chromosome Location	chr8:51697838-51697839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10958040	0.94[JPT][hapmap]
rs10958055	0.94[JPT][hapmap]
rs10958065	0.92[CEU][hapmap]
rs10958080	0.92[CEU][hapmap]
rs10958113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10958115	1.00[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs10958140	0.86[EUR][1000 genomes]
rs11775633	1.00[CEU][hapmap]
rs11776122	1.00[ASN][1000 genomes]
rs11783089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11986411	0.84[CEU][hapmap]
rs11988981	0.83[CHB][hapmap]
rs11989031	1.00[ASN][1000 genomes]
rs11989688	1.00[ASN][1000 genomes]
rs11994756	0.94[ASN][1000 genomes]
rs11997213	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs11998393	1.00[ASN][1000 genomes]
rs12375352	0.94[JPT][hapmap]
rs12542948	0.85[EUR][1000 genomes]
rs12542977	0.94[ASN][1000 genomes]
rs12546823	0.94[JPT][hapmap]
rs12548479	0.94[JPT][hapmap]
rs12675337	0.94[ASN][1000 genomes]
rs13251980	1.00[CEU][hapmap]
rs13252863	0.92[CEU][hapmap];0.94[JPT][hapmap]
rs13258440	0.94[JPT][hapmap]
rs13258680	0.85[EUR][1000 genomes]
rs13261493	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13264074	0.94[JPT][hapmap]
rs13267665	0.94[ASN][1000 genomes]
rs13269724	1.00[CEU][hapmap]
rs13271648	0.94[ASN][1000 genomes]
rs13273663	0.88[CEU][hapmap]
rs13277400	0.86[EUR][1000 genomes]
rs1385049	0.94[ASN][1000 genomes]
rs1484129	0.86[EUR][1000 genomes]
rs1484132	0.95[ASN][1000 genomes]
rs1508621	1.00[CEU][hapmap]
rs1508622	0.92[CEU][hapmap]
rs1508624	0.83[JPT][hapmap]
rs1567311	0.92[CEU][hapmap]
rs16915417	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1843079	0.94[ASN][1000 genomes]
rs1911835	0.83[EUR][1000 genomes]
rs1911836	0.95[CEU][hapmap];0.85[JPT][hapmap]
rs2048208	0.94[JPT][hapmap]
rs2069312	0.95[ASN][1000 genomes]
rs2170856	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2170857	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2202797	1.00[CEU][hapmap]
rs34473019	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs35108997	0.98[ASN][1000 genomes]
rs4242462	0.92[CEU][hapmap]
rs4382493	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4422788	1.00[CEU][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4873479	0.86[EUR][1000 genomes]
rs4873480	0.94[ASN][1000 genomes]
rs55818362	0.94[ASN][1000 genomes]
rs6473337	0.92[CEU][hapmap];0.97[TSI][hapmap]
rs6651341	0.81[EUR][1000 genomes]
rs6981207	0.96[EUR][1000 genomes]
rs6981429	0.96[EUR][1000 genomes]
rs6985321	0.96[EUR][1000 genomes]
rs6988562	1.00[CEU][hapmap]
rs6988854	0.92[CEU][hapmap]
rs6990102	0.83[JPT][hapmap]
rs7011647	0.92[CEU][hapmap]
rs7015370	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7016914	0.94[JPT][hapmap]
rs713179	0.94[JPT][hapmap]
rs717509	0.92[CEU][hapmap]
rs7820724	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7822224	0.96[CEU][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs7831359	0.94[JPT][hapmap]
rs7831651	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7832799	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7833823	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7846699	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs906656	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs936722	0.85[EUR][1000 genomes]
rs9650276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890874	chr8:51681031-51772697	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv890875	chr8:51681031-51780761	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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