Variant report

Variant	rs13258680
Chromosome Location	chr8:51757440-51757441
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10087228	0.90[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs10087953	0.81[AFR][1000 genomes]
rs10097209	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10097404	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10099033	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10111045	0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1018207	0.81[JPT][hapmap]
rs10216649	0.90[JPT][hapmap];0.80[YRI][hapmap];0.80[ASN][1000 genomes]
rs10958023	0.81[JPT][hapmap]
rs10958061	0.81[ASN][1000 genomes]
rs10958065	0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10958080	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs10958115	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10958117	0.83[CEU][hapmap]
rs10958140	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775633	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs11986411	0.89[JPT][hapmap]
rs11990378	0.83[AMR][1000 genomes]
rs12542948	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681280	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12681303	0.81[ASN][1000 genomes]
rs13251980	0.83[CEU][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap]
rs13261493	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13269724	0.83[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs13273160	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13277400	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396377	0.81[JPT][hapmap]
rs1484129	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508621	0.83[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1508622	0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1508623	0.81[JPT][hapmap]
rs1567311	0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs16915417	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16915581	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16915582	0.81[EUR][1000 genomes]
rs16915583	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1911835	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1911836	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs2170856	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2170857	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2202797	0.83[CEU][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap]
rs2392741	0.85[CHB][hapmap]
rs2392761	0.81[ASN][1000 genomes]
rs28470779	0.80[ASN][1000 genomes]
rs28647321	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs28815525	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34486025	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34871864	0.81[JPT][hapmap]
rs35521388	0.81[ASN][1000 genomes]
rs35654157	0.80[EUR][1000 genomes]
rs3999808	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4242462	0.81[JPT][hapmap];0.91[YRI][hapmap]
rs4382493	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4422788	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873155	0.90[JPT][hapmap]
rs4873479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6473319	0.90[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs6473337	0.89[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs6473485	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6473486	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6651341	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66730072	0.81[ASN][1000 genomes]
rs6981207	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6981429	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6985321	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6988562	0.83[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6988854	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6991993	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6992341	0.90[JPT][hapmap];0.80[YRI][hapmap];0.80[ASN][1000 genomes]
rs6992551	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7009895	0.81[YRI][hapmap]
rs7011647	0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7013183	0.81[ASN][1000 genomes]
rs7013366	0.81[JPT][hapmap]
rs7015370	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7018008	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7018197	0.90[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs7460470	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7812344	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7816024	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs7820724	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7822224	0.86[CEU][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7829079	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7831651	0.83[CEU][hapmap]
rs7833823	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7834256	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7834585	0.90[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs7834922	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7844393	0.89[JPT][hapmap]
rs7845831	0.81[ASN][1000 genomes]
rs7846699	0.83[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs936722	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650276	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890874	chr8:51681031-51772697	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv890875	chr8:51681031-51780761	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv890876	chr8:51725654-51780761	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv521625	chr8:51733342-51760410	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv890877	chr8:51733342-51946827	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv890878	chr8:51737153-51796456	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv890879	chr8:51737153-51862244	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv890880	chr8:51737153-51883927	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv890881	chr8:51737153-51946827	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv890882	chr8:51737153-51946827	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv34807	chr8:51737987-51883447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2756704	chr8:51744861-51779451	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv890883	chr8:51744861-51796456	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv2756812	chr8:51750040-51883407	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv2759614	chr8:51750040-51883407	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv890884	chr8:51750403-51854351	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv1015808	chr8:51750738-51859216	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv890885	chr8:51755350-51946827	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51755200-51757800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:51755800-51757800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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