Variant report

Variant	rs6473337
Chromosome Location	chr8:51664842-51664843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10087228	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs10087953	0.83[AFR][1000 genomes]
rs10097209	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10097404	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10099033	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10101076	0.80[ASN][1000 genomes]
rs10111045	0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1018207	0.89[CHD][hapmap]
rs10216649	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs10958061	0.83[ASN][1000 genomes]
rs10958065	0.84[CEU][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10958066	0.81[ASN][1000 genomes]
rs10958080	0.84[CEU][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap]
rs10958115	0.94[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap]
rs10958117	0.92[CEU][hapmap];0.97[TSI][hapmap]
rs10958140	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11775633	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs11785968	0.80[ASN][1000 genomes]
rs11986411	0.89[CHD][hapmap];0.84[JPT][hapmap]
rs12542948	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12681280	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12681303	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13251980	0.92[CEU][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.80[ASN][1000 genomes]
rs13252863	0.84[CEU][hapmap]
rs13258680	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13261493	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269724	0.92[CEU][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap]
rs13277400	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1396377	0.87[CHD][hapmap]
rs1484129	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508621	0.92[CEU][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1508622	0.84[CEU][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1567311	0.94[ASW][hapmap];0.84[CEU][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16915417	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1911835	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1911836	0.86[CEU][hapmap]
rs2170856	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170857	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202797	0.92[CEU][hapmap];0.91[YRI][hapmap]
rs2392741	0.84[CHB][hapmap]
rs2392761	0.83[ASN][1000 genomes]
rs28470779	0.82[ASN][1000 genomes]
rs28647321	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28683156	0.84[EUR][1000 genomes]
rs28815525	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34486025	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34871864	0.89[CHD][hapmap]
rs35521388	0.83[ASN][1000 genomes]
rs3999808	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4242462	0.84[CEU][hapmap];0.91[YRI][hapmap]
rs4382493	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422788	1.00[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873155	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4873479	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6473292	0.80[ASN][1000 genomes]
rs6473319	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs6651341	0.82[AMR][1000 genomes]
rs66730072	0.83[ASN][1000 genomes]
rs6981207	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981429	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985321	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988562	0.92[CEU][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap]
rs6988854	0.84[CEU][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap]
rs6992341	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs6992551	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7009895	0.81[ASN][1000 genomes]
rs7011647	0.84[CEU][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7012338	0.80[ASN][1000 genomes]
rs7013183	0.83[ASN][1000 genomes]
rs7015370	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018197	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs717509	0.84[CEU][hapmap]
rs7460470	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7812344	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7816024	0.84[JPT][hapmap];0.95[YRI][hapmap]
rs7820724	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822224	0.88[ASW][hapmap];0.92[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.80[JPT][hapmap];0.95[LWK][hapmap];0.95[MKK][hapmap];0.88[TSI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7829079	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7831651	0.92[CEU][hapmap];0.97[TSI][hapmap]
rs7833823	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834256	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7834585	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7845831	0.83[ASN][1000 genomes]
rs7846699	0.94[ASW][hapmap];0.92[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.90[LWK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap]
rs906656	0.84[CEU][hapmap]
rs936722	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9650276	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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