Variant report

Variant	rs12681280
Chromosome Location	chr8:51648503-51648504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10087228	0.99[ASN][1000 genomes]
rs10087953	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10097209	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10097404	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10099033	0.97[ASN][1000 genomes]
rs10101076	0.94[ASN][1000 genomes]
rs10110050	0.84[ASN][1000 genomes]
rs10111045	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10216649	0.97[ASN][1000 genomes]
rs10429378	0.84[ASN][1000 genomes]
rs10958023	0.84[ASN][1000 genomes]
rs10958026	0.84[ASN][1000 genomes]
rs10958061	0.99[ASN][1000 genomes]
rs10958065	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10958066	0.98[ASN][1000 genomes]
rs10958140	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11785968	0.94[ASN][1000 genomes]
rs11997970	0.84[ASN][1000 genomes]
rs12542948	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12681303	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13250468	0.86[ASN][1000 genomes]
rs13251980	0.92[ASN][1000 genomes]
rs13258680	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13261493	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13263172	0.88[ASN][1000 genomes]
rs13271305	0.88[ASN][1000 genomes]
rs13277400	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1396377	0.84[ASN][1000 genomes]
rs1472907	0.84[ASN][1000 genomes]
rs1484129	0.84[AFR][1000 genomes]
rs1508621	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1508622	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1508623	0.81[ASN][1000 genomes]
rs1567311	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16915417	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1911835	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2170856	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2170857	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2202797	0.84[ASN][1000 genomes]
rs2392761	0.99[ASN][1000 genomes]
rs28470779	0.97[ASN][1000 genomes]
rs28647321	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28683156	0.88[ASN][1000 genomes]
rs28815525	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34486025	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs34871864	0.84[ASN][1000 genomes]
rs35521388	0.99[ASN][1000 genomes]
rs3999808	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4242462	0.81[ASN][1000 genomes]
rs4382493	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4422788	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4873153	0.84[ASN][1000 genomes]
rs4873155	0.94[ASN][1000 genomes]
rs4873479	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6473292	0.92[ASN][1000 genomes]
rs6473319	0.99[ASN][1000 genomes]
rs66730072	0.99[ASN][1000 genomes]
rs67729017	0.88[ASN][1000 genomes]
rs6981207	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6981429	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6985321	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6987633	0.84[ASN][1000 genomes]
rs6991518	0.91[ASN][1000 genomes]
rs6992341	0.97[ASN][1000 genomes]
rs6992551	0.99[ASN][1000 genomes]
rs6999211	0.84[ASN][1000 genomes]
rs7002119	0.91[ASN][1000 genomes]
rs7009895	0.96[ASN][1000 genomes]
rs7011647	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7012338	0.92[ASN][1000 genomes]
rs7013183	0.99[ASN][1000 genomes]
rs7013366	0.84[ASN][1000 genomes]
rs7015370	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7018197	0.99[ASN][1000 genomes]
rs7460470	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7812344	0.99[ASN][1000 genomes]
rs7820724	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7822224	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7829079	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7833823	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7834256	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7834585	0.99[ASN][1000 genomes]
rs7844393	0.82[ASN][1000 genomes]
rs7845831	0.99[ASN][1000 genomes]
rs936722	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3413384	chr8:51646474-51648547	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51608000-51648800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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