Variant report

Variant	rs13277400
Chromosome Location	chr8:51751753-51751754
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10087228	0.81[ASN][1000 genomes]
rs10087953	0.81[AFR][1000 genomes]
rs10097209	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10097404	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10099033	0.80[ASN][1000 genomes]
rs10111045	0.84[AFR][1000 genomes]
rs10216649	0.80[ASN][1000 genomes]
rs10958061	0.81[ASN][1000 genomes]
rs10958065	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10958140	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990378	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12542948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681280	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12681303	0.81[ASN][1000 genomes]
rs13258680	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261493	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13273160	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1484129	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508621	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1508622	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1567311	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs16915417	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16915581	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16915582	0.81[EUR][1000 genomes]
rs16915583	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1911835	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2170856	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2170857	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2392761	0.81[ASN][1000 genomes]
rs28470779	0.80[ASN][1000 genomes]
rs28647321	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs28815525	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34486025	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs35521388	0.81[ASN][1000 genomes]
rs35654157	0.81[EUR][1000 genomes]
rs3999808	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4382493	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4422788	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873479	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6473319	0.81[ASN][1000 genomes]
rs6473485	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6473486	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6651341	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66730072	0.81[ASN][1000 genomes]
rs6981207	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6981429	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6985321	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6991993	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6992341	0.80[ASN][1000 genomes]
rs6992551	0.81[ASN][1000 genomes]
rs7011647	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7013183	0.81[ASN][1000 genomes]
rs7015370	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7018008	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7018197	0.81[ASN][1000 genomes]
rs7460470	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7812344	0.81[ASN][1000 genomes]
rs7820724	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7822224	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7829079	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7833823	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7834256	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7834585	0.81[ASN][1000 genomes]
rs7834922	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7845831	0.81[ASN][1000 genomes]
rs936722	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650276	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019760	chr8:51628619-51862150	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1029698	chr8:51628619-51863635	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890874	chr8:51681031-51772697	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv890875	chr8:51681031-51780761	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv890876	chr8:51725654-51780761	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv521625	chr8:51733342-51760410	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv890877	chr8:51733342-51946827	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv890878	chr8:51737153-51796456	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv890879	chr8:51737153-51862244	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv890880	chr8:51737153-51883927	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv890881	chr8:51737153-51946827	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv890882	chr8:51737153-51946827	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv34807	chr8:51737987-51883447	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2756704	chr8:51744861-51779451	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv890883	chr8:51744861-51796456	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv2756812	chr8:51750040-51883407	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv2759614	chr8:51750040-51883407	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv890884	chr8:51750403-51854351	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv1015808	chr8:51750738-51859216	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51750800-51751800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:51750800-51752200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:51750800-51752200	Enhancers	Dnd41	blood
4	chr8:51750800-51752400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:51751000-51752000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:51751000-51752000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:51751000-51752200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:51751200-51752000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:51751400-51751800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:51751600-51752000	Enhancers	Cortex derived primary cultured neurospheres	brain

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