Variant report

Variant	rs62516846
Chromosome Location	chr8:51583973-51583974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10429378	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10958023	0.86[EUR][1000 genomes]
rs10958026	0.86[EUR][1000 genomes]
rs10958028	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11774604	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11774637	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11996267	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11996302	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11997970	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13250468	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13261218	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13263172	0.86[AMR][1000 genomes]
rs1396377	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1508624	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34871864	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35751430	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4873153	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62516802	0.88[EUR][1000 genomes]
rs62516843	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6990102	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6999211	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7013366	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7816076	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7844393	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv968558	chr8:51576756-51590786	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3371459	chr8:51583099-51587297	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51570200-51595200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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