Variant report

Variant	rs7850506
Chromosome Location	chr9:22448440-22448441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:22446916..22448600-chr9:22452229..22454221,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10115448	1.00[AMR][1000 genomes]
rs10124829	1.00[AMR][1000 genomes]
rs1499554	1.00[AMR][1000 genomes]
rs1499557	1.00[AMR][1000 genomes]
rs1948684	1.00[AMR][1000 genomes]
rs2173562	1.00[AMR][1000 genomes]
rs2383230	1.00[AMR][1000 genomes]
rs4007636	1.00[AMR][1000 genomes]
rs4977785	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1029289	chr9:22193167-23023688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1031822	chr9:22364573-22490686	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv869121	chr9:22382290-23232146	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv892750	chr9:22383816-22496640	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2761508	chr9:22400968-22819938	Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1016983	chr9:22412948-22672062	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1027227	chr9:22416348-22666768	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv540088	chr9:22416348-22666768	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv533941	chr9:22416549-23232146	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22446000-22450400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:22446200-22449000	Active TSS	Brain Anterior Caudate	brain
3	chr9:22446200-22449200	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr9:22446200-22449600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:22446200-22450000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:22446400-22449000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:22446400-22449000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:22446400-22449200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr9:22446400-22449200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:22446400-22449200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:22446400-22449400	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr9:22446600-22448800	Active TSS	Muscle Satellite Cultured Cells	--
13	chr9:22446600-22449000	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr9:22446600-22449400	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:22446600-22449400	Active TSS	Liver	Liver
16	chr9:22446600-22449400	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr9:22446600-22450200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:22446800-22448600	Active TSS	Stomach Mucosa	stomach
19	chr9:22446800-22449000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr9:22446800-22449200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:22447600-22448800	Active TSS	Brain Hippocampus Middle	brain
22	chr9:22448000-22448800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:22448000-22452600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:22448200-22448800	Active TSS	A549	lung
25	chr9:22448200-22449200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
26	chr9:22448200-22449600	Bivalent/Poised TSS	NH-A	brain
27	chr9:22448200-22454400	Weak transcription	HMEC	breast
28	chr9:22448200-22454600	Weak transcription	Aorta	Aorta
29	chr9:22448400-22448800	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr9:22448400-22448800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:22448400-22449000	Active TSS	H1 Cell Line	embryonic stem cell
32	chr9:22448400-22449200	Active TSS	Fetal Stomach	stomach
33	chr9:22448400-22449200	Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr9:22448400-22449200	Enhancers	Hela-S3	cervix
35	chr9:22448400-22449400	Active TSS	Adipose Nuclei	Adipose
36	chr9:22448400-22450000	Active TSS	HUVEC	blood vessel
37	chr9:22448400-22450600	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr9:22448400-22451400	Weak transcription	Pancreas	Pancrea
39	chr9:22448400-22459000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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