Variant report

Variant	rs7851035
Chromosome Location	chr9:26872051-26872052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26863201..26866107-chr9:26870458..26872508,2	K562	blood:
2	chr9:26865662..26868224-chr9:26870486..26872108,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10812483	0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10812484	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967558	1.00[ASW][hapmap];0.87[LWK][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs10967559	0.82[ASW][hapmap];0.87[LWK][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs10967568	1.00[ASW][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967574	1.00[AMR][1000 genomes]
rs10967577	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967579	1.00[ASW][hapmap];0.88[MKK][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967582	0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967583	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967584	0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12004912	0.94[YRI][hapmap]
rs12335435	0.80[AFR][1000 genomes]
rs12335922	0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336610	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12337566	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338827	0.85[AFR][1000 genomes]
rs12342214	1.00[ASW][hapmap];0.88[MKK][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343057	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343845	0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343965	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344019	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345414	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345417	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12346378	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12347697	1.00[ASW][hapmap]
rs12350072	1.00[ASW][hapmap]
rs12351014	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351117	0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351187	0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352229	0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352731	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352777	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12353080	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12353172	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1414799	0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7023459	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7025993	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7026496	1.00[ASW][hapmap];0.90[MKK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7029328	1.00[AMR][1000 genomes]
rs7035029	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7039799	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7048891	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26832200-26878400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:26834000-26882400	Weak transcription	HUVEC	blood vessel
4	chr9:26834200-26878400	Weak transcription	Brain Angular Gyrus	brain
5	chr9:26834200-26878600	Weak transcription	Spleen	Spleen
6	chr9:26834200-26880200	Weak transcription	Lung	lung
7	chr9:26834200-26880200	Weak transcription	NHEK	skin
8	chr9:26834200-26882200	Weak transcription	HMEC	breast
9	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
11	chr9:26836400-26879600	Weak transcription	Esophagus	oesophagus
12	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
13	chr9:26838000-26878200	Weak transcription	Brain Germinal Matrix	brain
14	chr9:26838200-26879600	Weak transcription	Pancreas	Pancrea
15	chr9:26840600-26882400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:26840800-26879800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:26841200-26879800	Weak transcription	Colonic Mucosa	Colon
18	chr9:26842600-26882200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:26842800-26879600	Weak transcription	Thymus	Thymus
20	chr9:26843200-26878400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:26846600-26881600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr9:26847000-26883000	Weak transcription	K562	blood
23	chr9:26851400-26878600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:26851400-26888000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:26851800-26888600	Weak transcription	Fetal Heart	heart
26	chr9:26851800-26891600	Weak transcription	Stomach Mucosa	stomach
27	chr9:26852400-26888000	Weak transcription	NHLF	lung
28	chr9:26852800-26876000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr9:26853200-26878600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr9:26853600-26878200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr9:26853800-26878400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:26853800-26878400	Weak transcription	Aorta	Aorta
33	chr9:26855000-26882200	Weak transcription	Right Ventricle	heart
34	chr9:26855400-26880200	Weak transcription	HepG2	liver
35	chr9:26855800-26888200	Weak transcription	NH-A	brain
36	chr9:26856000-26878800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr9:26856000-26881600	Weak transcription	Brain Hippocampus Middle	brain
38	chr9:26856000-26882200	Weak transcription	Brain Anterior Caudate	brain
39	chr9:26856000-26882200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:26856200-26878400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:26856200-26881400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr9:26856400-26878600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:26856600-26878600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:26856600-26888400	Weak transcription	Osteobl	bone
45	chr9:26857600-26891000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr9:26859400-26878200	Weak transcription	Ovary	ovary
47	chr9:26859400-26878400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:26859400-26882200	Weak transcription	Small Intestine	intestine
49	chr9:26859600-26875600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr9:26859600-26875600	Weak transcription	Fetal Muscle Trunk	muscle

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