Variant report

Variant	rs7029328
Chromosome Location	chr9:26882436-26882437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:26882335-26882442	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr9:26882084-26882912	K562	blood:	n/a	n/a
3	POLR2A	chr9:26882198-26883136	H1-hESC	embryonic stem cell:	n/a	n/a
4	CBX3	chr9:26882181-26882467	K562	blood:	n/a	n/a
5	KAP1	chr9:26882177-26882698	HEK293	kidney:	n/a	n/a
6	KAP1	chr9:26881992-26882896	K562	blood:	n/a	n/a
7	SETDB1	chr9:26882162-26882694	U2OS	brain:	n/a	n/a
8	POLR2A	chr9:26882129-26882448	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26882206..26885004-chr9:26891360..26894322,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232466	TF binding region
ENSG00000120159	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10812483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10812484	1.00[AMR][1000 genomes]
rs10967568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967574	1.00[AMR][1000 genomes]
rs10967577	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967582	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10967584	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12004912	0.82[AFR][1000 genomes]
rs12335922	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336610	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12337566	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338827	0.88[AFR][1000 genomes]
rs12342214	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343057	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343845	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343965	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344019	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12344293	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345414	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345417	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345714	0.81[AFR][1000 genomes]
rs12346378	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351117	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351187	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352731	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12352777	1.00[AMR][1000 genomes]
rs12353080	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12353172	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1414799	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7023459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7025993	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7026496	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035029	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7039799	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7851035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
4	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
5	chr9:26847000-26883000	Weak transcription	K562	blood
6	chr9:26851400-26888000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:26851800-26888600	Weak transcription	Fetal Heart	heart
8	chr9:26851800-26891600	Weak transcription	Stomach Mucosa	stomach
9	chr9:26852400-26888000	Weak transcription	NHLF	lung
10	chr9:26855800-26888200	Weak transcription	NH-A	brain
11	chr9:26856600-26888400	Weak transcription	Osteobl	bone
12	chr9:26857600-26891000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:26859800-26890000	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:26875600-26885000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr9:26875800-26887400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr9:26876800-26887400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:26876800-26888400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr9:26877400-26883400	Strong transcription	Adipose Nuclei	Adipose
19	chr9:26877400-26885000	Strong transcription	Duodenum Mucosa	Duodenum
20	chr9:26878000-26884600	Strong transcription	Placenta	Placenta
21	chr9:26878000-26884800	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr9:26878000-26887400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:26878200-26883000	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:26878200-26884400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr9:26878200-26884400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:26878200-26888600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr9:26878400-26883400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:26878400-26883400	Strong transcription	Brain Angular Gyrus	brain
29	chr9:26878400-26884600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:26878400-26884600	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:26878600-26883000	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:26878600-26883400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:26878800-26882600	Weak transcription	Fetal Kidney	kidney
34	chr9:26878800-26882600	Strong transcription	Fetal Lung	lung
35	chr9:26878800-26884200	Strong transcription	Fetal Intestine Large	intestine
36	chr9:26879000-26883200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr9:26879200-26884000	Strong transcription	Stomach Smooth Muscle	stomach
38	chr9:26879600-26883200	Strong transcription	Primary T cells from cord blood	blood
39	chr9:26879600-26883400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:26879600-26883400	Strong transcription	Pancreas	Pancrea
41	chr9:26879800-26882800	Strong transcription	Left Ventricle	heart
42	chr9:26879800-26883400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:26880000-26884800	Strong transcription	A549	lung
44	chr9:26880200-26882800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:26880200-26883400	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:26880200-26884200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr9:26880200-26887600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr9:26880400-26883600	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr9:26880600-26888200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr9:26880800-26882600	Weak transcription	HepG2	liver

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