Variant report

Variant	rs12345714
Chromosome Location	chr9:26890088-26890089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:26884245..26886305-chr9:26888073..26890557,2	K562	blood:
2	chr9:26888414..26890276-chr9:26890319..26892503,2	MCF-7	breast:
3	chr9:26889862..26894629-chr9:26953159..26958871,9	K562	blood:

Variant related genes	Relation type
ENSG00000120159	Chromatin interaction
ENSG00000234676	Chromatin interaction
ENSG00000096872	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10812483	0.92[AFR][1000 genomes]
rs10967568	0.92[AFR][1000 genomes]
rs10967577	0.92[AFR][1000 genomes]
rs10967579	0.92[AFR][1000 genomes]
rs10967582	0.92[AFR][1000 genomes]
rs10967583	0.92[AFR][1000 genomes]
rs10967584	0.92[AFR][1000 genomes]
rs12004912	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335922	0.92[AFR][1000 genomes]
rs12336610	0.89[AFR][1000 genomes]
rs12337566	0.92[AFR][1000 genomes]
rs12338827	0.91[AFR][1000 genomes]
rs12342214	0.92[AFR][1000 genomes]
rs12343057	0.92[AFR][1000 genomes]
rs12343845	0.89[AFR][1000 genomes]
rs12343965	0.92[AFR][1000 genomes]
rs12344019	0.92[AFR][1000 genomes]
rs12344293	0.88[AFR][1000 genomes]
rs12345414	0.92[AFR][1000 genomes]
rs12345417	0.89[AFR][1000 genomes]
rs12346378	0.92[AFR][1000 genomes]
rs12351014	0.92[AFR][1000 genomes]
rs12351117	0.92[AFR][1000 genomes]
rs12351187	0.92[AFR][1000 genomes]
rs12352229	0.92[AFR][1000 genomes]
rs12352731	0.91[AFR][1000 genomes]
rs12353080	0.92[AFR][1000 genomes]
rs12353172	0.92[AFR][1000 genomes]
rs1414799	0.92[AFR][1000 genomes]
rs16910832	0.82[AFR][1000 genomes]
rs16910834	0.83[AFR][1000 genomes]
rs7023459	0.89[AFR][1000 genomes]
rs7025993	0.92[AFR][1000 genomes]
rs7026496	0.92[AFR][1000 genomes]
rs7029328	0.81[AFR][1000 genomes]
rs7035029	0.92[AFR][1000 genomes]
rs7039799	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
2	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
3	chr9:26851800-26891600	Weak transcription	Stomach Mucosa	stomach
4	chr9:26857600-26891000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:26882600-26891000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:26882800-26890800	Weak transcription	HMEC	breast
7	chr9:26882800-26891000	Weak transcription	Aorta	Aorta
8	chr9:26882800-26891200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:26882800-26891400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:26882800-26891600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:26882800-26891800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:26882800-26892000	Weak transcription	Lung	lung
13	chr9:26883000-26891600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:26883000-26891600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:26883000-26891600	Weak transcription	Small Intestine	intestine
16	chr9:26883200-26891000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr9:26883200-26892200	Weak transcription	Spleen	Spleen
18	chr9:26883400-26890800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:26883400-26890800	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:26883400-26890800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:26883400-26890800	Weak transcription	Right Ventricle	heart
22	chr9:26883400-26891000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:26883400-26891000	Weak transcription	Brain Angular Gyrus	brain
24	chr9:26883400-26891000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:26883400-26891000	Weak transcription	Fetal Stomach	stomach
26	chr9:26883400-26891000	Weak transcription	Thymus	Thymus
27	chr9:26883400-26891000	Weak transcription	NHEK	skin
28	chr9:26883400-26891200	Weak transcription	Adipose Nuclei	Adipose
29	chr9:26883400-26891800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:26883400-26892200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr9:26883600-26890200	Weak transcription	Fetal Brain Male	brain
32	chr9:26883600-26891000	Weak transcription	Brain Germinal Matrix	brain
33	chr9:26883600-26891000	Weak transcription	Fetal Lung	lung
34	chr9:26883600-26891000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr9:26883600-26891400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:26883600-26891600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:26883600-26891600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr9:26884000-26890400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr9:26884000-26890800	Weak transcription	Colonic Mucosa	Colon
40	chr9:26884000-26891000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:26884200-26890200	Weak transcription	Fetal Muscle Leg	muscle
42	chr9:26884200-26890600	Weak transcription	Fetal Intestine Large	intestine
43	chr9:26884200-26891000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:26884400-26891000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:26884600-26890600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:26884600-26890800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr9:26884600-26890800	Weak transcription	Fetal Kidney	kidney
48	chr9:26884600-26891000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:26884600-26891000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:26884600-26891000	Weak transcription	Fetal Brain Female	brain

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