Variant report

Variant	rs16910834
Chromosome Location	chr9:26840484-26840485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10283643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1048949	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10511793	1.00[CHB][hapmap]
rs10812483	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs10812484	0.85[YRI][hapmap]
rs10812492	1.00[CHB][hapmap]
rs10812500	1.00[CHB][hapmap]
rs10967558	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs10967559	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs10967568	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs10967577	0.83[AFR][1000 genomes]
rs10967579	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs10967582	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs10967583	0.81[AFR][1000 genomes]
rs10967584	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs10967593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10967594	1.00[CHB][hapmap]
rs10967595	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10967624	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10967625	1.00[CHB][hapmap]
rs10967634	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10967638	0.84[EUR][1000 genomes]
rs10967639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10967640	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10967644	0.84[EUR][1000 genomes]
rs11999015	0.88[ASN][1000 genomes]
rs12001845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12002068	0.88[ASN][1000 genomes]
rs12003612	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12004912	0.90[YRI][hapmap]
rs12335435	0.81[AFR][1000 genomes]
rs12335922	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs12336610	0.81[AFR][1000 genomes]
rs12337566	0.83[AFR][1000 genomes]
rs12338678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12338827	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12339063	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12342005	1.00[CHB][hapmap]
rs12342214	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs12343057	0.83[AFR][1000 genomes]
rs12343845	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs12343965	0.83[AFR][1000 genomes]
rs12344019	0.83[AFR][1000 genomes]
rs12345094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12345414	0.83[AFR][1000 genomes]
rs12345417	0.81[AFR][1000 genomes]
rs12345714	0.83[AFR][1000 genomes]
rs12346378	0.83[AFR][1000 genomes]
rs12349359	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12351014	0.83[AFR][1000 genomes]
rs12351117	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs12351187	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs12352229	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs12352441	1.00[CHB][hapmap]
rs12352731	0.82[AFR][1000 genomes]
rs12353080	0.83[AFR][1000 genomes]
rs12353172	0.83[AFR][1000 genomes]
rs1414799	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs16910832	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16910888	1.00[CHB][hapmap]
rs16910895	1.00[CHB][hapmap]
rs17694121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17694140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17694300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17694306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17694549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17755820	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17755887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17755911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17756221	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17760378	1.00[JPT][hapmap]
rs41271173	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41272237	0.82[EUR][1000 genomes]
rs41272239	0.84[EUR][1000 genomes]
rs59478807	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59757728	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61331313	0.88[ASN][1000 genomes]
rs6475948	1.00[CHB][hapmap]
rs7023459	0.81[AFR][1000 genomes]
rs7025993	0.83[AFR][1000 genomes]
rs7026496	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs7035029	0.83[AFR][1000 genomes]
rs7037860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7039400	1.00[CHB][hapmap]
rs7039799	0.83[AFR][1000 genomes]
rs7040516	1.00[CHB][hapmap]
rs73433963	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73643117	0.82[ASN][1000 genomes]
rs73643119	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73643120	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73643125	0.84[EUR][1000 genomes]
rs7851035	0.83[YRI][hapmap]
rs7871097	1.00[CHB][hapmap]
rs7871286	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3373096	chr9:26825001-26848031	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26822600-26846200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:26829200-26842200	Weak transcription	Left Ventricle	heart
4	chr9:26830200-26865400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:26832200-26866800	Weak transcription	Gastric	stomach
6	chr9:26832200-26878400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:26833800-26842200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:26834000-26840800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:26834000-26882400	Weak transcription	HUVEC	blood vessel
10	chr9:26834200-26840800	Weak transcription	Placenta	Placenta
11	chr9:26834200-26842000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:26834200-26842400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:26834200-26842400	Weak transcription	HSMM	muscle
14	chr9:26834200-26849800	Weak transcription	Fetal Thymus	thymus
15	chr9:26834200-26852800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:26834200-26852800	Weak transcription	HSMMtube	muscle
17	chr9:26834200-26853400	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:26834200-26854800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:26834200-26855000	Weak transcription	Ovary	ovary
20	chr9:26834200-26858800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:26834200-26859000	Weak transcription	Fetal Kidney	kidney
22	chr9:26834200-26870600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:26834200-26878400	Weak transcription	Brain Angular Gyrus	brain
24	chr9:26834200-26878600	Weak transcription	Spleen	Spleen
25	chr9:26834200-26880200	Weak transcription	Lung	lung
26	chr9:26834200-26880200	Weak transcription	NHEK	skin
27	chr9:26834200-26882200	Weak transcription	HMEC	breast
28	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
30	chr9:26834400-26840600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:26834400-26854800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr9:26835800-26842200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:26836200-26854200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:26836400-26842200	Weak transcription	Primary T cells from cord blood	blood
35	chr9:26836400-26842200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr9:26836400-26842600	Weak transcription	Dnd41	blood
37	chr9:26836400-26849000	Weak transcription	Primary B cells from cord blood	blood
38	chr9:26836400-26855000	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:26836400-26859000	Weak transcription	Fetal Brain Male	brain
40	chr9:26836400-26879600	Weak transcription	Esophagus	oesophagus
41	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
42	chr9:26836800-26841400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr9:26837400-26842000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr9:26837400-26848800	Weak transcription	Hela-S3	cervix
45	chr9:26837400-26855200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:26837600-26840600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr9:26837600-26842200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:26837800-26843200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:26837800-26845000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:26837800-26855800	Weak transcription	Osteobl	bone

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